Locus 5577

Sequence ID 2L_DroMel_CAF1
Location 15,844,230 – 15,844,337
Length 107
Max. P 0.543502
window8854

overview

Window 4

Location 15,844,230 – 15,844,337
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.77
Mean single sequence MFE -29.35
Consensus MFE -18.97
Energy contribution -18.50
Covariance contribution -0.47
Combinations/Pair 1.21
Mean z-score -1.44
Structure conservation index 0.65
SVM decision value 0.02
SVM RNA-class probability 0.543502
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15844230 107 + 22407834
CUAUAUGCGGGCGGUGUAUUUAUUUGCGCCUUUGAGUGGCUUACGCC-CAACUGCCUGCCAGCUAUCCUGCGCCGCAUCCACA------------UCCUCGUCCAUAUCCACAUGCACAU
....((((((((((((((......))))))....((((((....((.-.....))..)))).)).....)).)))))).....------------.....((.(((......))).)).. ( -27.60)
>DroPse_CAF1 3743 101 + 1
---UAUGCGGGCGGCGUAUUUAUUUACGCCUUUGAGUGGUUUACGCC-CAGCUGCCUUCCAGCUAUCUAUCCCC---CUCACA------------GCCCCAGUCACAGUCCCAGUCGCAG
---..((.((((((((((......))))))..((((.((..((.(..-.(((((.....)))))..)))..)).---))))..------------))))))((.((.......)).)).. ( -31.00)
>DroSec_CAF1 16456 107 + 1
CUAUAUGCGGGCGGUGUAUUUAUUUGCGCCUUUGAGUGGUUUACGCC-CAACUGCCUGGCAGCUAUCCUGCGCCACAUCCACA------------UCCUCGUCCAUAUCCACAUGCACAU
.....(((((((((((((......)))))).(((.(((.....))).-)))..))))(((.((......))))).........------------...................)))... ( -27.80)
>DroSim_CAF1 16764 107 + 1
CUAUAUGCGGGCGGUGUAUUUAUUUGCGCCUUUGAGUGGUUUACGCC-CAACUGCCUGGCAGCUAUCCUGCGCCACAUCCACA------------UCCUCGUCCAUAUCCACAUGCACAU
.....(((((((((((((......)))))).(((.(((.....))).-)))..))))(((.((......))))).........------------...................)))... ( -27.80)
>DroEre_CAF1 1339 119 + 1
CUAUAUGCGGGCGGUGUAUUUAUUUGCGCCUUUGAGUGGUUUACGCC-CAACUGCCUGGCAGCUAUCCUGCGCCACAGCCACAUUCACAUUCACGUCCACGUCCAUAUCCACAUGCACAU
.....(((((((((((((......)))))).....((((((...((.-.....)).((((.((......)))))).))))))............))))..((........))..)))... ( -31.50)
>DroPer_CAF1 29534 102 + 1
---UAUGCGGGCGGCGUAUUUAUUUACGCCUUUGAGUGGUUUACGCCCCAGCUGCCUUCCAGCUAUCUAUCCCC---CUCACA------------GCCCCAGUCACAGUCCCAGUCGCAG
---..((.((((((((((......))))))..((((.((..((......(((((.....)))))...))..)).---))))..------------))))))((.((.......)).)).. ( -30.40)
>consensus
CUAUAUGCGGGCGGUGUAUUUAUUUGCGCCUUUGAGUGGUUUACGCC_CAACUGCCUGCCAGCUAUCCUGCGCCACAUCCACA____________UCCUCGUCCAUAUCCACAUGCACAU
.....(((((((((((((......))))))....((((((....)))...)))))))).))........................................................... (-18.97 = -18.50 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:41 2006