Locus 557

Sequence ID 2L_DroMel_CAF1
Location 1,739,236 – 1,739,330
Length 94
Max. P 0.952150
window921

overview

Window 1

Location 1,739,236 – 1,739,330
Length 94
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 89.14
Mean single sequence MFE -18.37
Consensus MFE -18.55
Energy contribution -18.67
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.57
Structure conservation index 1.01
SVM decision value 1.42
SVM RNA-class probability 0.952150
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1739236 94 - 22407834
CAA-AGUAGAUGAGAACUACAAUAGAAUGAGGCAAUUGAUCGUUUCGGCUUGGCUACUGUAAAGCCACGAUAAAUACA------------AAAAGAAAAACUAAGCC
...-.((((.......))))..........(((.(((.(((((...(((((.((....)).)))))))))).)))...------------...((.....))..))) ( -17.10)
>DroSim_CAF1 2832 106 - 1
CAA-AGUAGAUGAGAACUACAAUAGAAUGAGGCAAUUGAUCGUUUCGGCUUGGCUACUGCAAAGCCACGAUAAAUACAAAAAAAAAUACAAAAAGGAAAACUAAGCC
...-.((((.......))))..........(((.(((.(((((...(((((.((....)).)))))))))).)))..................((.....))..))) ( -19.90)
>DroYak_CAF1 2855 100 - 1
CAAAAGUAGAGGAGAACUACAAUAGAAUGAGGCAAUUGAUCGUUUCGGCUUGGCUACUGCACAGCCACGAUAAAUACAAAA-------CAAAAAGGAAAACUAAGCC
.....((((.......))))..........(((.(((.(((((...((((..((....))..))))))))).)))......-------.....((.....))..))) ( -18.10)
>consensus
CAA_AGUAGAUGAGAACUACAAUAGAAUGAGGCAAUUGAUCGUUUCGGCUUGGCUACUGCAAAGCCACGAUAAAUACAAAA_______CAAAAAGGAAAACUAAGCC
.....((((.......))))..........(((.(((.(((((...(((((.((....)).)))))))))).)))..................((.....))..))) (-18.55 = -18.67 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:38 2006