| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,828,770 – 15,828,876 |
| Length | 106 |
| Max. P | 0.546897 |
| Location | 15,828,770 – 15,828,876 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.76 |
| Mean single sequence MFE | -32.95 |
| Consensus MFE | -20.84 |
| Energy contribution | -22.71 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15828770 106 - 22407834 UGCCAAAAGGAACGGGAAAAGGCCUUCCUGUUUACAAUUCAUAAGCAAUUUCGGACUGGCGACAAGGCG-----AGUCGAGG---------CUCCCAUGUUGGGAAAUCAACCUCGGCAC ((((.....(((((((((......)))))))))....................((((.((......)).-----))))((((---------.((((.....))))......)))))))). ( -34.60) >DroSec_CAF1 1290 106 - 1 UGCCAAAAAGAACGGGAAAAGGCCUUCCUGUUUACAAUUCAUAAGCAAUUUCGGACUGGCGACAAGGCG-----AGUCCAGG---------CUCCCAUGUUGGGAAAUCAACCUCGGCAC ((((.........((((....((((...((((((.......)))))).....(((((.((......)).-----))))))))---------)))))..(((((....)))))...)))). ( -34.60) >DroSim_CAF1 1486 106 - 1 UGCCAAAAAGAACGGGAAAAGGCCUUCCUGUUUACAAUUCAUAAGCAAUUUCGGACUGGCGACAAGGCG-----AGUCGAGG---------CUCCCAUGUUGGGAAAUCAACCUCGGCAC ((((.....(((((((((......)))))))))....................((((.((......)).-----))))((((---------.((((.....))))......)))))))). ( -34.50) >DroPer_CAF1 10751 106 - 1 CCCCAACAGG-----GAGA-------UCUGUUUACAAUUCAUAAGCAAUUUCGGGCUGGGGACAAGUCGCUGUGAGCCAAGCUGUACAUAUUUCCCAUGCCGGAAAAUGAGCCUCUGC-- ......((((-----(.(.-------((((((((.......)))))).((((.(((((((((...((((((........))).).))....)))))).))).))))..)).)))))).-- ( -28.10) >consensus UGCCAAAAAGAACGGGAAAAGGCCUUCCUGUUUACAAUUCAUAAGCAAUUUCGGACUGGCGACAAGGCG_____AGUCGAGG_________CUCCCAUGUUGGGAAAUCAACCUCGGCAC (((((....(((((((((......)))))))))....(((..((....))..))).)))))..............(((((((..........((((.....))))......))))))).. (-20.84 = -22.71 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:11 2006