| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,828,518 – 15,828,633 |
| Length | 115 |
| Max. P | 0.557804 |
| Location | 15,828,518 – 15,828,633 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 97.09 |
| Mean single sequence MFE | -15.87 |
| Consensus MFE | -15.20 |
| Energy contribution | -15.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15828518 115 + 22407834 GACAAAAAAAUUAACAUAAACCGUGAAAUGUUGUCUGCCAACAAAAUAGAAGAACUAAACAAAAAGAAAAUCACGUUUUGUAAUUAUACAACAGAGAAUACACGGUCAAGGAACG ...................((((((...((((.((((.........(((.....))).((((((.(.....)...))))))..........)))).))))))))))......... ( -16.20) >DroSec_CAF1 1039 114 + 1 GACAAA-AAAUUAACAUAAACCGUGAAAUGUUGUCUGCCAAAAAUAAAGAAGAACUAAACAAAAAGAAAAUCACGUUUUGUAAUUAUACAACAGAGAAUACACGGUCAAGGAACG ......-............((((((...((((.((((.................((........))...........(((((....))))))))).))))))))))......... ( -15.00) >DroSim_CAF1 1235 114 + 1 GACAAA-AAAUUAACAUAAACCGUGAAAUGUUGUCUGCCAAAAAUAAAGGAGAACUAAACAAAAAGAAAAUCACGUUUUGUAAUUAUACAACAGAGAAUACACGGUCAAGGAACG ......-............((((((...((((.((((((.........))........((((((.(.....)...))))))..........)))).))))))))))......... ( -16.40) >consensus GACAAA_AAAUUAACAUAAACCGUGAAAUGUUGUCUGCCAAAAAUAAAGAAGAACUAAACAAAAAGAAAAUCACGUUUUGUAAUUAUACAACAGAGAAUACACGGUCAAGGAACG ...................((((((...((((.((((..........((.....))..((((((.(.....)...))))))..........)))).))))))))))......... (-15.20 = -15.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:10 2006