Locus 556

Sequence ID 2L_DroMel_CAF1
Location 1,732,088 – 1,732,193
Length 105
Max. P 0.861937
window920

overview

Window 0

Location 1,732,088 – 1,732,193
Length 105
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 80.87
Mean single sequence MFE -26.15
Consensus MFE -19.83
Energy contribution -20.38
Covariance contribution 0.56
Combinations/Pair 1.19
Mean z-score -1.91
Structure conservation index 0.76
SVM decision value 0.83
SVM RNA-class probability 0.861937
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1732088 105 + 22407834
AAAAAUUAACUAUGGAUAUCAACAAGUGCUAGAGAUG--AUAUAAGCAAUAACCCACCUGAAGGGCUGCUUGGCAAAAGGUGGCAUCAAUUAGCACUUGGUAGGGUU
.........((((.(....)..((((((((((.((((--.(((.....)))..((((((.....(((....)))...))))))))))..)))))))))))))).... ( -28.90)
>DroPse_CAF1 223 101 + 1
AAAAUGCAUCAAU---AAUCAACAAGUUCCGUUU-UCACUUCUAUG--GAAACUCACCAGCAGCGCUGCCUGGCAGAAGGUGGCGUCAACCAGGACCUGGUAGGGCU
.....((......---..............((((-(((......))--)))))...((....((((..(((......)))..))))..(((((...))))).)))). ( -27.70)
>DroSec_CAF1 3584 102 + 1
AAAAAAUAACUAUGGAUAUCAACAAGUGGUAAAG-----AUAUAAGCAAAAACCAACCUGCAGGGCUGCCUGGCAAAAGGUGGCAUCAAUUAGCACUUGGUAGGGUU
.........((((.(....)..((((((.(((.(-----((....(((..........)))...((..(((......)))..)))))..))).)))))))))).... ( -23.70)
>DroSim_CAF1 3272 102 + 1
GAAAAAUAACUAUGGAUAUCAACAAGUGCUAAAG-----AUAUAAGCAAAAACCAACCUGCAGGGCUGCCUGGCAAAAGGUGGCAUCAAUUAGCACUUGGUAGGGUU
.........((((.(....)..((((((((((.(-----((....(((..........)))...((..(((......)))..)))))..)))))))))))))).... ( -28.20)
>DroEre_CAF1 4321 102 + 1
CAAAAAUAAGUAUGGAAAUCAACAAGUGCAAUCG-----AUAUAAGCAAAAACCCACCUGCAGGGCUGCCUGGCAAAAUGUGGCAUCAAUUAGCACUUGGUAGGGUU
................((((..((((((((((.(-----((...........(((.......)))..(((...........)))))).))).)))))))....)))) ( -21.10)
>DroYak_CAF1 3309 102 + 1
CAAAAAUAACUAUGAAAAUCAACAAGUGCUAUUU-----AUAUAUGAAAGACUGAACCUGCAGGGCUGCCUGGCAGAAGGUGGCAUCAAUCAGCACUUGGUAGGGUU
................((((..((((((((.(((-----(....)))).((.(((.((....))((..(((......)))..)).))).))))))))))....)))) ( -27.30)
>consensus
AAAAAAUAACUAUGGAAAUCAACAAGUGCUAUAG_____AUAUAAGCAAAAACCAACCUGCAGGGCUGCCUGGCAAAAGGUGGCAUCAAUUAGCACUUGGUAGGGUU
......................(((((((((.........................((....))((..(((......)))..))......)))))))))........ (-19.83 = -20.38 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:37 2006