Locus 5555

Sequence ID 2L_DroMel_CAF1
Location 15,821,045 – 15,821,138
Length 93
Max. P 0.634742
window8813

overview

Window 3

Location 15,821,045 – 15,821,138
Length 93
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 87.77
Mean single sequence MFE -13.89
Consensus MFE -10.22
Energy contribution -9.90
Covariance contribution -0.33
Combinations/Pair 1.17
Mean z-score -2.24
Structure conservation index 0.74
SVM decision value 0.21
SVM RNA-class probability 0.634742
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15821045 93 + 22407834
AACAUGUGAUAAAACUAUUAUUAAAGCUCUUGUCUCUUCCAUCAUUGGCUUUAGUAAUGUUAAGACUCCGAGCUAUUUUACCAUAUUUUCACU
.....((((...(((.((((((((((((..((..........))..))))))))))))))).((........))..............)))). ( -15.50)
>DroSec_CAF1 15648 92 + 1
AACGUCUGACCAAACUAUUAUUAAAGCUCUUUUCUUUUCUAU-AUUGACUUUAAUAAUGUUGAGUCCCCGAGCUAUUUUACCAAAUUUUCUUU
..((...(((..(((.((((((((((.((.............-...)))))))))))))))..)))..))....................... ( -13.09)
>DroSim_CAF1 15623 92 + 1
AACGUCUGACCAAACUAUUAUUAAAGCUCUUUUCUUUUCUAU-AUUGACUUUAAUAAUGUUGAGUCCCCGAGCCAUUUUACCAAAUUUUCUUU
..((...(((..(((.((((((((((.((.............-...)))))))))))))))..)))..))....................... ( -13.09)
>consensus
AACGUCUGACCAAACUAUUAUUAAAGCUCUUUUCUUUUCUAU_AUUGACUUUAAUAAUGUUGAGUCCCCGAGCUAUUUUACCAAAUUUUCUUU
.......(((..(((.((((((((((.((.................)))))))))))))))..)))........................... (-10.22 =  -9.90 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:02 2006