Locus 5551

Sequence ID 2L_DroMel_CAF1
Location 15,818,482 – 15,818,575
Length 93
Max. P 0.732296
window8806

overview

Window 6

Location 15,818,482 – 15,818,575
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 71.47
Mean single sequence MFE -27.43
Consensus MFE -3.23
Energy contribution -3.67
Covariance contribution 0.45
Combinations/Pair 1.25
Mean z-score -2.97
Structure conservation index 0.12
SVM decision value 0.43
SVM RNA-class probability 0.732296
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15818482 93 + 22407834
AGACUGAAGCC-----CGGAUUCUGGAGUUGUUAGUUGUG---GCAUUC---------GCACACA-------ACAGGUACACACAAAACAA---UUCCACAUUGGGCAAGUCAAUUAAAA
.((((...(((-----(((....((((((((((.((((((---((....---------)).))))-------)).(.....)....)))))---)))))..)))))).))))........ ( -34.50)
>DroPse_CAF1 11612 114 + 1
---CGGAAGCCUUUGCCAAUGUCUGGAGUGGUGCGCUUUG---CCACUCCUCGGGUCUACAUACGGUUACACACAGGUACCAACGGAGCAAAAUUCCCGCAUGUAGCAAGUCAAUUAAAA
---.((((...(((((...(((..((((((((.......)---)))))))..............(((.((......))))).)))..))))).)))).((.....))............. ( -27.40)
>DroSec_CAF1 13078 93 + 1
AGACUGAAGCC-----CGGAUUCUGGAGUUGUUAGUUGUG---GCAUUC---------GCACACA-------ACAGGUACACACAAAACAA---UUCCACAUUGGGCAAGUCAAUUAAAA
.((((...(((-----(((....((((((((((.((((((---((....---------)).))))-------)).(.....)....)))))---)))))..)))))).))))........ ( -34.50)
>DroSim_CAF1 13086 93 + 1
AGACUGAAGCC-----CGGAUUCUGGAGUUGUUAGUUGUG---GCAUUC---------ACACACA-------ACAGGUACACACAAAACAA---UUCCGCAUUGGGCAAGUCAAUUAAAA
.((((...(((-----(((....((((((((((.((((((---......---------...))))-------)).(.....)....)))))---)))))..)))))).))))........ ( -31.00)
>DroEre_CAF1 12839 79 + 1
AG-------------------UCUGGAGUUGUUCGUUGUG---GCAUUU---------GCACACA-------ACAGGUACACACAAAACAA---UUCCGCAUUGGGCAAGUCAAUUAAAA
.(-------------------((((((((((((.((((((---((....---------)).))))-------)).(.....)....)))))---)))).....))))............. ( -21.90)
>DroYak_CAF1 38592 82 + 1
AG-------------------CCUGGAGUUAUUAACAGUGUCUGCAAUU---------GCACACA-------ACAGGUACACACAAAACAA---UUCCGCAUUGGGCAAGUCAAAUCAAU
.(-------------------(((((((((.......((((.(((..((---------(....))-------)...))).)))).....))---)))).....))))............. ( -15.30)
>consensus
AG_CUGAAGCC_____CGGAUUCUGGAGUUGUUAGUUGUG___GCAUUC_________GCACACA_______ACAGGUACACACAAAACAA___UUCCGCAUUGGGCAAGUCAAUUAAAA
.......................(((((.......(((((...((...............................))...)))))........)))))..................... ( -3.23 =  -3.67 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:56 2006