| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,815,177 – 15,815,283 |
| Length | 106 |
| Max. P | 0.652606 |
| Location | 15,815,177 – 15,815,283 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.31 |
| Mean single sequence MFE | -24.66 |
| Consensus MFE | -20.10 |
| Energy contribution | -20.16 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15815177 106 + 22407834 ------------UUUCUUUCAUUUUUUUUUU--UACUGUAAAGGUUUCGCUUUGUCGCUUCAUUUUGCGCAAAGUUUGCAGUUCCACAAAAGUUGACACGUCAUCAACACAAAGAAGUUG ------------(((((((....((((....--.(((((((.......((((((.(((........)))))))))))))))).....))))(((((.......)))))..)))))))... ( -22.41) >DroPse_CAF1 7950 118 + 1 UUUUUAGUGCUUUUUUGUUCCCUUU--UUUUCGAGCAGCAAAGGUUUCGCUUUGUCGCUUCAUUUUGCGCAAAGUUUGCAGUUCCACAAAAGUUGACACGUCAUCAACACAAAGAAGUUG ........((((((((((.......--.....((((.((((.......((((((.(((........))))))))))))).)))).......(((((.......))))))))))))))).. ( -28.91) >DroSec_CAF1 9829 104 + 1 ------------UUUCUUUCACUUU--UUUU--UACUGUAAAGGUUUCGCUUUGUCGCUUCAUUUUGCGCAAAGUUUGCAGUUCCACAAAAGUUGACACGUCAUCAACACAAAGAAGUCG ------------........(((((--(((.--.(((((((.......((((((.(((........)))))))))))))))).........(((((.......)))))..)))))))).. ( -23.11) >DroPer_CAF1 19251 117 + 1 UUUUUAGUGCUUUUUUGUUCCCUUU---UUUCGAGCAGCAAAGGUUUCGCUUUGUCGCUUCAUUUUGCGCAAAGUUUGCAGUUCCACAAAAGUUGACACGUCAUCAACACAAAGAAGUUG ........((((((((((.......---....((((.((((.......((((((.(((........))))))))))))).)))).......(((((.......))))))))))))))).. ( -28.91) >DroEre_CAF1 9906 102 + 1 ------------UUUCUUUUAC-U---UUUU--UACUGUAAAGGUUUCGCUUUGUCGCUUCAUUUUGCGCAAAGUUUGCAGUUCCUCAAAAGUUGACACGUCAUCAACACAAAGAACUUG ------------.((((((...-.---....--.(((((((.......((((((.(((........)))))))))))))))).........(((((.......)))))..)))))).... ( -21.71) >DroYak_CAF1 35481 103 + 1 ------------UUUCUUUUACGU---UUUU--UACUGUAAAGGUUUCGCUUUGUCGCUUCAUUUUGCGCAAAGUUUGCAGUUCCACAAAAGUUGACACGUCAUCAACACAAAGAAAUUG ------------(((((((...((---....--.(((((((.......((((((.(((........))))))))))))))))...))....(((((.......)))))..)))))))... ( -22.91) >consensus ____________UUUCUUUCACUUU__UUUU__UACUGUAAAGGUUUCGCUUUGUCGCUUCAUUUUGCGCAAAGUUUGCAGUUCCACAAAAGUUGACACGUCAUCAACACAAAGAAGUUG ............(((((((...............(((((((.......((((((.(((........)))))))))))))))).........(((((.......)))))..)))))))... (-20.10 = -20.16 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:55 2006