Locus 5542

Sequence ID 2L_DroMel_CAF1
Location 15,802,023 – 15,802,129
Length 106
Max. P 0.779424
window8793

overview

Window 3

Location 15,802,023 – 15,802,129
Length 106
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 96.88
Mean single sequence MFE -26.90
Consensus MFE -26.90
Energy contribution -26.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 1.00
SVM decision value 0.55
SVM RNA-class probability 0.779424
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15802023 106 - 22407834
AUUUUUCUGCUAUUCUGGGUUGCCUGCGGGCCUCCCUUUGGCAGCACCGCCCU-CCCUCUUGCUUAUCGUUUUAGCCAAAUGUUCGAACUGUUCGCAUUGGAUUACU
......((((((....(((..(((....)))..)))..)))))).........-.((...(((..((.((((.(((.....))).)))).))..)))..))...... ( -26.90)
>DroSec_CAF1 25892 107 - 1
AUUUUUCUGCUAUUUUGGGUUGCCUGCGGGCCUCCCUUUGGCAGCACCGUCCCCCCCUUUUGCUUAUCGUUUUAGCCAAAUGUUCGAACUGUUCGCAUUGGAUUACU
......((((((....(((..(((....)))..)))..))))))...........((...(((..((.((((.(((.....))).)))).))..)))..))...... ( -26.90)
>DroSim_CAF1 17204 106 - 1
AUUUUUCUGCUAUUUUGGGUUGCCUGCGGGCCUCCCUUUGGCAGCACCGUCCC-CCCUUUUGCUUAUCGUUUUAGCCAAAUGUUCGAACUGUUCGCAUUGGAUUACU
......((((((....(((..(((....)))..)))..)))))).........-.((...(((..((.((((.(((.....))).)))).))..)))..))...... ( -26.90)
>consensus
AUUUUUCUGCUAUUUUGGGUUGCCUGCGGGCCUCCCUUUGGCAGCACCGUCCC_CCCUUUUGCUUAUCGUUUUAGCCAAAUGUUCGAACUGUUCGCAUUGGAUUACU
......((((((....(((..(((....)))..)))..))))))...........((...(((..((.((((.(((.....))).)))).))..)))..))...... (-26.90 = -26.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:43 2006