Locus 5540

Sequence ID 2L_DroMel_CAF1
Location 15,799,190 – 15,799,308
Length 118
Max. P 0.854925
window8789

overview

Window 9

Location 15,799,190 – 15,799,308
Length 118
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 84.67
Mean single sequence MFE -34.39
Consensus MFE -21.75
Energy contribution -21.62
Covariance contribution -0.12
Combinations/Pair 1.21
Mean z-score -2.43
Structure conservation index 0.63
SVM decision value 0.80
SVM RNA-class probability 0.854925
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15799190 118 + 22407834
UAAUUAAAGAGUCCGCCCGAACAAAAGGCUUAAAAUAUAGUUUUAAGCUUAUCAAGUUUGUUCGCCGAUUAGUGAAUUUGUUUCAGGUGUGG-GCGGGGUCGAUAAGGACUUAGCAUUA
........((((((((((((((((((((((((((((...)))))))))))......)))))))(((.((...((((.....))))...)).)-)).))))......))))))....... ( -36.70)
>DroSec_CAF1 23069 118 + 1
UAAUUAAAGAGUCCGCCCGAACAAAAGGCUUAAAAUAUAGUUUUAAGCUUAUCAAGUUUGUUCGCCGAUUAGUGAAUUUGUUUCAGGUGUGG-GUGGGGUCGAUAAGGACUUGGCAUUA
........((((((((((((((((((((((((((((...)))))))))))......)))))))(((.((...((((.....))))...)).)-)).))))......))))))....... ( -34.30)
>DroAna_CAF1 22826 118 + 1
UCAUUAGGGCUCCCCCGAAAACAAAAGGCUUAAAAUAUAGUUUUAAGCUUAUCAAGUUCGUCUGC-UAUUAGCAAAUUUACGGCAGUUUUGGGGUGAGGUUGAUAAGCUCGAGGAUCGA
......((.(((((((((((.....(((((((((((...)))))))))))...........((((-(..............))))))))))))).))).)).......(((.....))) ( -29.84)
>DroSim_CAF1 14394 118 + 1
UAAUUAAAGAGUCCGCCCGAACAAAAGGCUUAAAAUAUAGUUUUAAGCUUAUCAAGUUUGUUCGCCGAUUAGUGAAUUUGUUUCAGGUGUGG-GCGGGGUCGAUAAGGACUUGGCAUUA
........((((((((((((((((((((((((((((...)))))))))))......)))))))(((.((...((((.....))))...)).)-)).))))......))))))....... ( -36.70)
>consensus
UAAUUAAAGAGUCCGCCCGAACAAAAGGCUUAAAAUAUAGUUUUAAGCUUAUCAAGUUUGUUCGCCGAUUAGUGAAUUUGUUUCAGGUGUGG_GCGGGGUCGAUAAGGACUUGGCAUUA
........((((((...(((((((((((((((((((...)))))))))))......))))))))....(((.(((.(((((.(((....))).))))).))).)))))))))....... (-21.75 = -21.62 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:39 2006