Locus 5532

Sequence ID 2L_DroMel_CAF1
Location 15,794,245 – 15,794,365
Length 120
Max. P 0.677839
window8777

overview

Window 7

Location 15,794,245 – 15,794,365
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.63
Mean single sequence MFE -26.66
Consensus MFE -21.40
Energy contribution -21.44
Covariance contribution 0.04
Combinations/Pair 1.22
Mean z-score -1.52
Structure conservation index 0.80
SVM decision value 0.30
SVM RNA-class probability 0.677839
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15794245 120 - 22407834
UAAUGGUAGCGAUAUUACUCCAAAGGCAAAGUGCUCUUCACUCCCCAUAAAGAAGUUGGUUUUAUUGCGAAAAACUUCGACAAGACAACCAGCGUAACUGAAUUCGCUAAUCAUUGAAAU
((((((((((((..((((......((...((((.....))))..))........(((((((...(((((((....)))).)))...)))))))))))......))))).))))))).... ( -30.30)
>DroSec_CAF1 18041 119 - 1
UAAUGGUAGCGAUAUUACUCCAAAGGCAAAGUGCUCUUCACUCCCCAUAAAGAAGUUGGUUUUAUUGCGCA-AACUUCGACAAGACAACCAGCGUAACUGAAUUCGCUAAUCAUUGAAAU
((((((((((((..((((......((...((((.....))))..))........(((((((...(((((..-.....)).)))...)))))))))))......))))).))))))).... ( -26.70)
>DroAna_CAF1 16914 118 - 1
UAAUGGUUGCGAUAUUACUCCAAAGGCAAAGUGCUCUCAACUCCCCAUAAAGAAGUUGGUUUUAUUGCGCA-AACUUCGACCAGGCAGCCAAGGAAACAGAACUUGCUAAUCGACAGAA-
...(((((((..............((...(((.......)))..)).....((((((.((........)).-))))))......))))))).(....).....................- ( -21.70)
>DroSim_CAF1 9237 119 - 1
UAAUGGUAGCGAUAUUACUCCAAAGGCAAAGUGCUCUUCACUCCCCAUAAAGAAGUUGGUUUUAUUGCGCA-AACUUCGACAAGACAACCAGCGUAACUGAAUUCGCUAAUCAUUGAAAU
((((((((((((..((((......((...((((.....))))..))........(((((((...(((((..-.....)).)))...)))))))))))......))))).))))))).... ( -26.70)
>DroEre_CAF1 18245 119 - 1
UAAUGGUAGCGAUAUUACUCCAAAAGCAAAGUGCUCUUCACUCCGCAUAAAGAAGUUGGUUUUAUUGCGCA-AACUUCGACAAGACAACCAGCGUAACUGAAUUCGCUAAUCAUUGAAAU
((((((((((((..((((.......((..((((.....))))..))........(((((((...(((((..-.....)).)))...)))))))))))......))))).))))))).... ( -27.90)
>consensus
UAAUGGUAGCGAUAUUACUCCAAAGGCAAAGUGCUCUUCACUCCCCAUAAAGAAGUUGGUUUUAUUGCGCA_AACUUCGACAAGACAACCAGCGUAACUGAAUUCGCUAAUCAUUGAAAU
((((((((((((............(((.....)))...................(((((((...(((((........)).)))...)))))))..........))))).))))))).... (-21.40 = -21.44 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:28 2006