| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,787,736 – 15,787,849 |
| Length | 113 |
| Max. P | 0.772698 |
| Location | 15,787,736 – 15,787,849 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.09 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -20.44 |
| Energy contribution | -20.83 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15787736 113 - 22407834 ---UCCACCA----UCCAAACCAGAUGCGACCACGCCCUCCAAUCGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ---.......----.......((((((......(((.....((((((((((....))))).((.((((((((....)))))))))).......))))).....)))......)))))).. ( -22.30) >DroSec_CAF1 11588 113 - 1 ---UCCACCA----UCCAAACCAGCUGCGACCACGCCCUCCAAUUGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ---.......----..(((((.....(((....)))....(((((((((((....))))).((.((((((((....))))))))))...))))))..................))))).. ( -23.40) >DroAna_CAF1 10607 120 - 1 CGCCCCACCAGCAGUUCAAGCCAUCUGCGACCACGCCCUCCAAUUGUUGUUCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUGGCA ..........((((............(((....)))....(((((((((((....))))).((.((((((((....))))))))))...))))))......))))(((((....))))). ( -30.20) >DroSim_CAF1 2721 113 - 1 ---UCCACCA----UCCAAACCAGCUGCGACCACGCCCUCCAAUUGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ---.......----..(((((.....(((....)))....(((((((((((....))))).((.((((((((....))))))))))...))))))..................))))).. ( -23.40) >DroEre_CAF1 6274 113 - 1 ---UCCACCA----UCGAAACCAGCUGCGACCACGCCCUCAAAUUGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ---.......----.........((.(((....(((....(((((.(((((....))))).((.((((((((....))))))))))........)))))....)))......)))..)). ( -20.90) >DroYak_CAF1 2880 113 - 1 ---UCCACCA----UCCAAACCAGCUGCGACCACGCCCUCCAAUUGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ---.......----..(((((.....(((....)))....(((((((((((....))))).((.((((((((....))))))))))...))))))..................))))).. ( -23.40) >consensus ___UCCACCA____UCCAAACCAGCUGCGACCACGCCCUCCAAUUGUUGUCCAUUGACAAAUGACCAUUUCAUAUGUGAAAUGGCAAUUCAAUUGAUUUCUCUGCGCCAAACCGUUUGCA ................(((((.....(((....)))....(((((((((((....))))).((.((((((((....))))))))))...))))))..................))))).. (-20.44 = -20.83 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:13 2006