| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,776,158 – 15,776,258 |
| Length | 100 |
| Max. P | 0.763234 |
| Location | 15,776,158 – 15,776,258 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 97.33 |
| Mean single sequence MFE | -23.43 |
| Consensus MFE | -21.05 |
| Energy contribution | -20.83 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15776158 100 + 22407834 UGCACUAGUCCAGCGUUCUGUAAGUGGCAUGAACAUCGCUGCAUUUUCUUGACAAUUUCUCAGCUUUUUUCUGCUGAUGCUCCCUGCUUUUUGAGUGCUU .(((((.....((((((((((.....))).))))...((((((......)).)).....(((((........))))).)).....))).....))))).. ( -24.20) >DroEre_CAF1 29505 100 + 1 UGCACUAGUCCAGCGUUCUGUAAGUGGCAUGAACAUCGCUGCAUUUUCUUGACAAUUUCUCAGCUUUUUUCUGCUGAUGCUCCCUUCUUUUUGAGUGCUU .(((((.((((((((((((((.....))).))))...)))).........)))......(((((........)))))................))))).. ( -23.10) >DroYak_CAF1 28893 100 + 1 UGCACUAGUCCAGCGUUCUGUAAGUGGGAUGAACAUCGCUGCAUUUUCUUGACAAUUUCUUAGCUUUUUUCUGCUGAUGUUCCCUUCUUUUUGAGUGCUU .(((((.((((.((.........)).))))(((((((..((((......)).)).......(((........))))))))))...........))))).. ( -23.00) >consensus UGCACUAGUCCAGCGUUCUGUAAGUGGCAUGAACAUCGCUGCAUUUUCUUGACAAUUUCUCAGCUUUUUUCUGCUGAUGCUCCCUUCUUUUUGAGUGCUU .(((((.(((.((.....((((.((((........))))))))....)).)))......(((((........)))))................))))).. (-21.05 = -20.83 + -0.22)
| Location | 15,776,158 – 15,776,258 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 97.33 |
| Mean single sequence MFE | -22.90 |
| Consensus MFE | -20.82 |
| Energy contribution | -20.60 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.763234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15776158 100 - 22407834 AAGCACUCAAAAAGCAGGGAGCAUCAGCAGAAAAAAGCUGAGAAAUUGUCAAGAAAAUGCAGCGAUGUUCAUGCCACUUACAGAACGCUGGACUAGUGCA ..(((((......(((..((((((((((........)))......(((.((......))))).))))))).)))......(((....)))....))))). ( -23.90) >DroEre_CAF1 29505 100 - 1 AAGCACUCAAAAAGAAGGGAGCAUCAGCAGAAAAAAGCUGAGAAAUUGUCAAGAAAAUGCAGCGAUGUUCAUGCCACUUACAGAACGCUGGACUAGUGCA ..(((((........(((..((((.((((.......((((....(((........))).))))..)))).))))..))).(((....)))....))))). ( -22.80) >DroYak_CAF1 28893 100 - 1 AAGCACUCAAAAAGAAGGGAACAUCAGCAGAAAAAAGCUAAGAAAUUGUCAAGAAAAUGCAGCGAUGUUCAUCCCACUUACAGAACGCUGGACUAGUGCA ..(((((.........((((((((((((........)))......(((.((......))))).)))))...)))).....(((....)))....))))). ( -22.00) >consensus AAGCACUCAAAAAGAAGGGAGCAUCAGCAGAAAAAAGCUGAGAAAUUGUCAAGAAAAUGCAGCGAUGUUCAUGCCACUUACAGAACGCUGGACUAGUGCA ..(((((.........((((((((((((........)))......(((.((......))))).)))))))...)).....(((....)))....))))). (-20.82 = -20.60 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:06 2006