Locus 551

Sequence ID 2L_DroMel_CAF1
Location 1,704,898 – 1,705,017
Length 119
Max. P 0.988299
window891

overview

Window 1

Location 1,704,898 – 1,705,017
Length 119
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 94.96
Mean single sequence MFE -24.93
Consensus MFE -24.07
Energy contribution -24.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.92
Structure conservation index 0.97
SVM decision value 2.11
SVM RNA-class probability 0.988299
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1704898 119 + 22407834
CGCAUAAUAAUCGGGCUGUGUUCCAGCUCUAGCACACCAUAGCAAAAAUAAAAAAUCCUAAUAAUAAGGAAAAAGAGUCAAUUUAGUGCAAUCACUUGCAAUAUAAGCCCGAAAUCCUA
..........((((((((((((...(((((.((........))............((((.......))))...))))).........((((....))))))))).)))))))....... ( -26.60)
>DroSim_CAF1 5264 119 + 1
UGUGUAAUAAUCGGGCUGUUUUCCAGCUCUAGCACACCACAGCAAAAAUAAAAAAUCCUAAUAAUAAGGAAAAAGAGUCAAUUUAGUGCAAUCACUUGCAAUAUAAGCCCGAAAUCCUA
..........(((((((........(((((.((........))............((((.......))))...)))))........(((((....))))).....)))))))....... ( -26.20)
>DroYak_CAF1 5121 118 + 1
CGCAUAAGUAUCGGGCUGUGUUCCAGCUCUAGCACACCAUAGCAAAAAUAAAAAAUCCUAAUAAUAAAGAA-AAGAGUCAAUUUAGUGCAAUCACUUGCAAUAUAAGCCCGAAAUCCUA
..........((((((((((((...(((((.((........))..............((........))..-.))))).........((((....))))))))).)))))))....... ( -22.00)
>consensus
CGCAUAAUAAUCGGGCUGUGUUCCAGCUCUAGCACACCAUAGCAAAAAUAAAAAAUCCUAAUAAUAAGGAAAAAGAGUCAAUUUAGUGCAAUCACUUGCAAUAUAAGCCCGAAAUCCUA
..........(((((((........(((((.((........))............((((.......))))...)))))........(((((....))))).....)))))))....... (-24.07 = -24.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:08 2006