Locus 5501

Sequence ID 2L_DroMel_CAF1
Location 15,736,163 – 15,736,260
Length 97
Max. P 0.866518
window8728

overview

Window 8

Location 15,736,163 – 15,736,260
Length 97
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 86.86
Mean single sequence MFE -35.57
Consensus MFE -29.31
Energy contribution -30.51
Covariance contribution 1.20
Combinations/Pair 1.14
Mean z-score -2.46
Structure conservation index 0.82
SVM decision value 0.85
SVM RNA-class probability 0.866518
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15736163 97 + 22407834
GUAGGAUCCCGAGUGGUUAUAGCUCCUGCGGGUCC---AACUUUCCCGCGGCGUAUUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU
((.(((.(((((.(((((((.(((((((((((...---......))))))).......))))))))))).))))).)))...))................ ( -36.41)
>DroSec_CAF1 55663 97 + 1
GUAGGAGCCCGAGUGGUUAUAGCUCCUGCGGGUCC---UACUUUCCCGCGGCGUAGUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU
((.(((((((((.(((((((.(((((((((((...---......))))))).......))))))))))).)))))))))...))................ ( -43.01)
>DroSim_CAF1 48311 97 + 1
GUAGGAGCCCGAGUGGUUAUAGCUCCUGCGGGUCC---UACUUUCCCGCGGCGUAGUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU
((.(((((((((.(((((((.(((((((((((...---......))))))).......))))))))))).)))))))))...))................ ( -43.01)
>DroEre_CAF1 54441 96 + 1
GUAGGAUCCCGAGUGGUUGUAGCUACUGCGGGUCC---UAC-UUCCCGCGGAGUAUUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU
((.(((.(((((.(((((((.(((.(((((((...---...-..))))))).(....).)))))))))).))))).)))...))................ ( -35.70)
>DroYak_CAF1 60424 93 + 1
GUAGGAUCCAGAGUGGUUGUAGCUCCUGCGGGUCU-------UUCCCGCGGAGUAUUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU
((((..(((((..(((((((.(((((((((((...-------..))))))).(....)))))))))))).)))))..))).).................. ( -33.30)
>DroAna_CAF1 45754 97 + 1
GUAGGAUCCCGAGCAGUUACAGCUCCUGCGGGUUUAUCUGUUUUCCCG-AAUGCAUUGACGCAUAACCAGUUGG-CCCCGUCACUUUGUAAUUACGGAA-
...((((((((((.(((....))).)).))))...))))......(((-((((((.(((((.....((....))-...)))))...))).))).)))..- ( -22.00)
>consensus
GUAGGAUCCCGAGUGGUUAUAGCUCCUGCGGGUCC___UACUUUCCCGCGGCGUAUUCGGGCAUAACCAGUUGGGCUCUGUCGCUUUAUAAUUACGAAAU
((.(((.(((((.(((((((.(((((((((((............))))))).......))))))))))).))))).)))...))................ (-29.31 = -30.51 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:41 2006