| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,700,121 – 1,700,231 |
| Length | 110 |
| Max. P | 0.613612 |
| Location | 1,700,121 – 1,700,231 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.35 |
| Mean single sequence MFE | -21.43 |
| Consensus MFE | -21.09 |
| Energy contribution | -20.87 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1700121 110 + 22407834 CACACAAUAGCAAUAAU--------AAGGGAAACCAAGACCAGAUCGAACUGCAAUAGUAAACUGAACUACCUCAAUUUUAGCCAUAGACUGCGCAGUGACGAGAUGAGCAUGA--UACC .........((......--------..((....)).....((..(((.(((((..((((.......))))...........((........)))))))..)))..)).))....--.... ( -22.00) >DroSim_CAF1 179 106 + 1 CACACAAUAGCAAUAAU--------AAGGGAAACC-AGACCAGAUCGAACUGCAAUAGUAAACUGAACUACCUCAAU--UAGCCAUAGACUGCGCAGUGACGAGAUGAGCAUGA--UAC- .........((......--------..((....))-....((..(((.(((((..((((.......)))).......--..((........)))))))..)))..)).))....--...- ( -22.00) >DroYak_CAF1 227 117 + 1 CACACAAUAGCAAUAAUACAAUAUUAAGGGAAACCAAGACCAGAUCGAACUGCAAUAGUAAACUGAACUACCUCAAU--UAGCCAUAGACUGCGCAGUGAUGAGAUGAGCAUGAGAUAC- .........((................((....)).....((..(((.(((((..((((.......)))).......--..((........)))))))..)))..)).)).........- ( -20.30) >consensus CACACAAUAGCAAUAAU________AAGGGAAACCAAGACCAGAUCGAACUGCAAUAGUAAACUGAACUACCUCAAU__UAGCCAUAGACUGCGCAGUGACGAGAUGAGCAUGA__UAC_ .........((................((....)).....((..(((.(((((..((((.......))))...........((........)))))))..)))..)).)).......... (-21.09 = -20.87 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:06 2006