Locus 5488

Sequence ID 2L_DroMel_CAF1
Location 15,696,503 – 15,696,618
Length 115
Max. P 0.720657
window8708

overview

Window 8

Location 15,696,503 – 15,696,618
Length 115
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 88.08
Mean single sequence MFE -13.60
Consensus MFE -12.45
Energy contribution -12.23
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -1.56
Structure conservation index 0.92
SVM decision value 0.40
SVM RNA-class probability 0.720657
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15696503 115 - 22407834
AUUCUUGUUUUUUUAUUUUUUUUUUUGUUAAGCAUCGGCUUCUUGCUUGACAUUCUUUUAAUUUUCAAUGCAUUUUCCGAACCCCAUGGAUUGCCUUUUCGAUUUAACCAUGCUC
.........................(((((((((.........))))))))).................(((...((((.......)))).)))..................... ( -14.70)
>DroSim_CAF1 17128 112 - 1
AUUCUUUU--UUUUAUAUU-UUUUUUGUUAAGCUUCGGCUUCUUGCUUGACAUUCUUUUAAUUUUCAAUGCAUUUUCCGAACCCCAUGGAUUGCCUUUUCGAUUUAACCUUGCUC
........--.........-.....((((((((...........)))))))).................(((...((((.......)))).)))..................... ( -13.30)
>DroYak_CAF1 26519 104 - 1
AUUCUUUUUU-----------UUUUUGUUAAGUUUCGGCUUCUUGCUUGACAUUAUUUUAAUUUUCAAUGCAUUUUCCUAACCCCAUGGAUUGCCUAUUCGAUUUAACCUUGCUC
..........-----------.....((((((((..(((....(((((((.((((...))))..)))).)))...(((.........)))..))).....))))))))....... ( -12.80)
>consensus
AUUCUUUUUUUUUUAU_UU_UUUUUUGUUAAGCUUCGGCUUCUUGCUUGACAUUCUUUUAAUUUUCAAUGCAUUUUCCGAACCCCAUGGAUUGCCUUUUCGAUUUAACCUUGCUC
.........................((((((((...........)))))))).................(((...(((.........))).)))..................... (-12.45 = -12.23 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:21 2006