| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,699,515 – 1,699,607 |
| Length | 92 |
| Max. P | 0.820677 |
| Location | 1,699,515 – 1,699,607 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 84.87 |
| Mean single sequence MFE | -32.42 |
| Consensus MFE | -26.90 |
| Energy contribution | -26.93 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820677 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1699515 92 + 22407834 --CUGGUUGCCGGUCCGACCCUGCACACCCCCAUCAGCGUUCGCUGGAGUCUGAAUUACAUUUUAUUUUUAAGUACGUUGGUGGGG-AGCAGCGG --..(((((......)))))((((....((((((((((((..(((.(((..((((......))))..))).)))))))))))))))-.))))... ( -32.50) >DroGri_CAF1 11257 90 + 1 AGUUGAUUGCAGCAACGCCUUU-----GCCGCAGCAACGUUCUCUGGAGUCUGAAUUACAUAUUAUUUUUAAGUACGUUGCUGUCGGCGUUGGCG .((((....))))..((((..(-----(((((((((((((.((..(((((..............)))))..)).))))))))).)))))..)))) ( -36.24) >DroSec_CAF1 18351 92 + 1 --CUGGUUGCCGGUCCGACCUUGCACACCCCCACCAGCGUUCGCUGGAGUCUGAAUUACAUUUUAUUUUUAAGUACGUUGGUGGGG-AGCAGGAG --((((...))))......(((((....((((((((((((..(((.(((..((((......))))..))).)))))))))))))))-.))))).. ( -33.80) >DroSim_CAF1 17731 92 + 1 --CUGGUUGCCGGUCCGACCUUGCACACCCCCACCAGCGUUCGCUGGAGUCUGAAUUACAUUUUAUUUUUAAGUACGUUGGUGGGG-CGCAGGAG --((((...))))......(((((....((((((((((((..(((.(((..((((......))))..))).)))))))))))))))-.))))).. ( -33.80) >DroEre_CAF1 9019 92 + 1 --CUGGCUGCCGGUCCCGCUUUGCACACCCCCAUCAGCGUUCGCUGGAGUCUGAAUUACAUUUUAUUUUUAAGUACGUUGGUGGGG-AGCAAAUG --((((...))))......(((((....((((((((((((..(((.(((..((((......))))..))).)))))))))))))))-.))))).. ( -29.10) >DroYak_CAF1 19627 92 + 1 --CUGGCUGCCGGUCCGUCUUUGCACACCCCCAUCAGCGUUCGCUGGAGUCUGAAUUACAUUUUAUUUUUAAGUACGUUGGUGGGG-CGCAAAUG --((((...))))......(((((....((((((((((((..(((.(((..((((......))))..))).)))))))))))))))-.))))).. ( -29.10) >consensus __CUGGUUGCCGGUCCGACCUUGCACACCCCCAUCAGCGUUCGCUGGAGUCUGAAUUACAUUUUAUUUUUAAGUACGUUGGUGGGG_AGCAGGAG ....(((((......)))))((((....((((((((((((..(((.(((..((((......))))..))).)))))))))))))))..))))... (-26.90 = -26.93 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:05 2006