Locus 5479

Sequence ID 2L_DroMel_CAF1
Location 15,633,454 – 15,633,555
Length 101
Max. P 0.574018
window8693

overview

Window 3

Location 15,633,454 – 15,633,555
Length 101
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 84.01
Mean single sequence MFE -33.51
Consensus MFE -25.05
Energy contribution -26.55
Covariance contribution 1.50
Combinations/Pair 1.24
Mean z-score -1.79
Structure conservation index 0.75
SVM decision value 0.08
SVM RNA-class probability 0.574018
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15633454 101 + 22407834
GGUCAAGUGGGUGAUUAGCCUUUAAUUUGAGGCCCUUUGUUAAUUAAGAUCCGGUGA-UCCCGCCGGGUCAUCAGGAAUGGAUUGCUGGACGUUGUUGGCCA
..((((((((((.....))))...))))))(((((..((((......(((((((((.-...)))))))))..(((.((....)).)))))))..)..)))). ( -34.90)
>DroGri_CAF1 151763 93 + 1
GGCCAAGUGGCUGAUUAGCCUUUAAUUGGCGGCCUUUUGUUAAUUUAGAC-CGGCGACUGUUGACUAGUGACCGGAAACAUUUUG---AC-----CUGUACC
.(((((..((((....)))).....)))))........(((((......(-(((..((((.....))))..)))).......)))---))-----....... ( -22.92)
>DroSec_CAF1 139978 101 + 1
GGUCAAGUGGGUGAUUAGCCUUUAAUUUGAGGCCCUUUGUUAAUUAAGAUCCAGUGA-UCCCGCCGGGUCAUCAGGCAUGGAUUGCUGGCAGUUGUUGGCCA
(((((.(..(.((....(((((......))))).................((((..(-(((.(((.........)))..))))..)))))).)..)))))). ( -35.10)
>DroSim_CAF1 133525 101 + 1
GGUCAAGUGGGUGAUUAGCCUUUAAUUUGAGGCCCUUUGUUAAUUAAGAUCCGGUGA-UCCCGCCGGGUCAUCAGGCAUGGAUUGCUGGCAGUUGUUGGCCA
((((((((.((..(((.(((((......)))))..............(((((((((.-...)))))))))..........)))..)).)).....)))))). ( -37.30)
>DroEre_CAF1 137585 101 + 1
GGUCAUGCGGGUGAUUAGCCUUUAAUUUGAGGUCCUUUGUUAAUUAAGAUCCGGUGA-UCCCGCCGGGUCAUAGGGCAUGGAUUGCUGGCAGUUGUUGGUCA
(..(((((.((..(((.((((((((((.((.(.....).))))))))(((((((((.-...)))))))))...))))...)))..)).))).....))..). ( -35.60)
>DroYak_CAF1 147732 101 + 1
GGUCAAGUGGGUGAUUAGCCUUUAAUUUGAGGCCCUUUGUUAAUUAAGAUCCGGUGA-UCUCGCCGGGUCAUCGGGGAUGGAUUGCUGGCAGUUGUUGGUCA
(..(((((.((..(((.(((((......)))))(((..((.......(((((((((.-...)))))))))))..)))...)))..)).)).....)))..). ( -35.21)
>consensus
GGUCAAGUGGGUGAUUAGCCUUUAAUUUGAGGCCCUUUGUUAAUUAAGAUCCGGUGA_UCCCGCCGGGUCAUCAGGCAUGGAUUGCUGGCAGUUGUUGGCCA
((((((((.(((((((.(((((......)))))..............(((((((((.....)))))))))..........))))))).)).....)))))). (-25.05 = -26.55 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:07 2006