Locus 5469

Sequence ID 2L_DroMel_CAF1
Location 15,599,058 – 15,599,149
Length 91
Max. P 0.624982
window8680

overview

Window 0

Location 15,599,058 – 15,599,149
Length 91
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.79
Mean single sequence MFE -14.17
Consensus MFE -7.76
Energy contribution -8.38
Covariance contribution 0.62
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.55
SVM decision value 0.19
SVM RNA-class probability 0.624982
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15599058 91 - 22407834
G-----CAGCAUGCUGCCAUCCAACUCAAA----UCCCUCACCCUCAGGCCAACCAUUUAUUCUAACGAAUCUAUUAAGUGGAAAUUUAUUUAAGCCAAC
(-----(((....)))).............----.............(((...((((((((((....))).....)))))))(((....)))..)))... ( -14.60)
>DroSec_CAF1 105695 91 - 1
G-----AAGCAUGCUGCCAUCCAACUCAAA----UCCCUCACCUUCUGGCAAACCAUUUAUUCUAACGAAUCUAUUAAGUGGAAAUUUAUUUAAGCCAAC
.-----..((....(((((...........----............)))))..((((((((((....))).....)))))))............)).... ( -13.20)
>DroSim_CAF1 97989 91 - 1
G-----CAGCAUGCUGCCAUCCAACUCGAA----UCCCUCACCCUCUGGCCAACCAUUUAUUCUAACGAAUCUAUUAAGUGGAAAUUUAUUUAAGCCAAC
(-----(((....)))).............----............((((...((((((((((....))).....)))))))(((....)))..)))).. ( -15.20)
>DroEre_CAF1 99543 82 - 1
G-----CAGCAUGCUGCCAUCCCACU-------------CACCCUUUGGCCAACCAUUUAUUCUAACGAAUCUAUUAAGUGGAAAUUUAUUUAAGCCAAC
(-----(((....)))).........-------------......(((((...((((((((((....))).....)))))))(((....)))..))))). ( -15.90)
>DroYak_CAF1 103129 95 - 1
G-----CAGCAUGCUGCCAUUCCACUUACCCUCUCACCUCACCCUCUGGCCUUCCAUUUAUUCUAACGAAUCUAUUAAGUGGAAAUUUAUUUAAGCUAAC
(-----(((....))))..(((((((((..................(((....)))...((((....))))....)))))))))................ ( -19.10)
>DroAna_CAF1 320973 81 - 1
ACAACCGAGCAUA-----------CUCUAA----GAACGCCCCCUU---CCAACCAUUUAUUGUAACGAAUCUAUUAAGUGGAAAUUUAUUUAAGC-AAA
......(((....-----------)))...----............---....(((((((..(........)...)))))))..............-... (  -7.00)
>consensus
G_____CAGCAUGCUGCCAUCCAACUCAAA____UCCCUCACCCUCUGGCCAACCAUUUAUUCUAACGAAUCUAUUAAGUGGAAAUUUAUUUAAGCCAAC
........((.....((((...........................))))...((((((((((....))).....)))))))............)).... ( -7.76 =  -8.38 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:54 2006