Locus 5463

Sequence ID 2L_DroMel_CAF1
Location 15,571,999 – 15,572,101
Length 102
Max. P 0.532640
window8671

overview

Window 1

Location 15,571,999 – 15,572,101
Length 102
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 81.36
Mean single sequence MFE -23.48
Consensus MFE -15.67
Energy contribution -16.67
Covariance contribution 1.01
Combinations/Pair 1.33
Mean z-score -1.40
Structure conservation index 0.67
SVM decision value -0.00
SVM RNA-class probability 0.532640
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15571999 102 + 22407834
GCAUUCAAGCAGGGAAAAUUACACAAAAAUCUUUGCCGGGAUUUUCUAAUUAAAGUUUCAGCAA----GCGAAACGCGGCGCCAAAGUGAAAUUAAUGGCACUGCC
..((((..(((((((..............)))))))..))))............(((((.....----..)))))((((.((((............)))).)))). ( -22.84)
>DroPse_CAF1 133640 106 + 1
GCAUUCAAGCGGAGAAAAUUACACAAAAAUCUUUGCAGGGAUUUUCUAAUUAAAGUUUCAACGAACGAACGAAACGCGGCGCCAAAGUGAAAUUAAUGGCGCUGCC
...(((..(((((((..............))))))).(..(((((......)))))..)...........)))..(((((((((............))))))))). ( -27.74)
>DroGri_CAF1 86886 92 + 1
GCAUCA----AGAGAAAAUUACACAA-AAUCUCGGCCAAGGUUUUCUAAUUAAAGUUUCAGCGG-----C----GUCGGCGCCAAAGUGAAAUUAAUGGCGUUGGC
......----.((((...........-..)))).(((((.(((...(((((...((....))((-----(----(....)))).......)))))..))).))))) ( -20.22)
>DroMoj_CAF1 110888 92 + 1
GCAUCA----AAAGAAAAUUACACAA-AAUCUUUGGCUGGCUUUUCUAAUUAAAGUUUCAACGG-----C----CUCGGCGCCAAAGAGAAAUUAAUGGCGUUGCC
......----(((((...........-..)))))((((((((((.......))))).....)))-----)----).((((((((..((....))..)))))))).. ( -20.62)
>DroAna_CAF1 205002 102 + 1
GCAUUCAAGCAAAGAAAAUUACAAAAAAAUCUGCGCCGGGAUUUUCUAAUUAAAGUUUCUGCAA----ACGAAUCGCGGGGCCAAAGUUAAAUUAAUGGCGCUGCC
(.((((..(((....................)))((.(..(((((......)))))..).))..----..)))))((((.((((............)))).)))). ( -21.75)
>DroPer_CAF1 132834 106 + 1
GCAUUCAAGCGGAGAAAAUUACACAAAAAUCUUUGCAGGGAUUUUCUAAUUAAAGUUUCAACGAACGAACGAAACGCGGCGCCAAAGUGAAAUUAAUGGCGCUGCC
...(((..(((((((..............))))))).(..(((((......)))))..)...........)))..(((((((((............))))))))). ( -27.74)
>consensus
GCAUUCAAGCAGAGAAAAUUACACAAAAAUCUUUGCCGGGAUUUUCUAAUUAAAGUUUCAACGA____ACGAAACGCGGCGCCAAAGUGAAAUUAAUGGCGCUGCC
........(((((((..............))))))).((((((((......))))))))................(((((((((............))))))))). (-15.67 = -16.67 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:46 2006