Locus 5449

Sequence ID 2L_DroMel_CAF1
Location 15,533,663 – 15,533,759
Length 96
Max. P 0.833185
window8651

overview

Window 1

Location 15,533,663 – 15,533,759
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 88.02
Mean single sequence MFE -24.66
Consensus MFE -19.28
Energy contribution -19.56
Covariance contribution 0.28
Combinations/Pair 1.16
Mean z-score -1.85
Structure conservation index 0.78
SVM decision value 0.72
SVM RNA-class probability 0.833185
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15533663 96 + 22407834
UAUCGAAAUAUGUAUUGAAUUAAUUUGUGAGGACAAUGUGGCUUUUUUCUACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGGCACACAAAC
..((((........)))).....((((((((((((.(((((.......))))).))))))...(((((((((.....)))).)))))..)))))). ( -25.40)
>DroSec_CAF1 38720 96 + 1
UUUCGAAAUAAGUAUUGAAUUAAUUUGUGAGGACAAUGUGGCUUUUUUCGACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGGCACACAAAC
.(((((........)))))....((((((((((((.(((.(.......).))).))))))...(((((((((.....)))).)))))..)))))). ( -23.90)
>DroSim_CAF1 38840 96 + 1
UUUCGAAAUAUGUAUUGAAUUAAUUUUUGAGGACAAUGUGACUUUUUUCGACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGGCACACAAAC
.(((((........)))))........((((((((.(((((......)).))).)))))))).(((((((((.....)))).)))))......... ( -20.90)
>DroEre_CAF1 40269 95 + 1
CUUAGAAAUUUGUAUUGAAUUAGUUUGUGAGGACACAGUGGUUU-UUUCGACAGUGUUCAUACCUACUGGGCACACCGCUCAAGUGGUGCACAAAC
......................(((((((.((((((.((.(...-...).)).)))))).((((.(((((((.....)))).)))))))))))))) ( -27.30)
>DroYak_CAF1 42645 96 + 1
UUUGUAAAUUUGUAUUGAAUUAACUUGUGAGGACAAAGUGGCCUUUUCCGACAGUGUCCUUAUCUACUUGGCUUACCGCUCAAGUGGUACACAAAC
........(((((.............(((((((((..((((......)).))..)))))))))(((((((((.....)).)))))))...))))). ( -25.80)
>consensus
UUUCGAAAUAUGUAUUGAAUUAAUUUGUGAGGACAAUGUGGCUUUUUUCGACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGGCACACAAAC
.......................((((((.(((((.(((((......)).))).)))))....(((((((((.....)))).)))))..)))))). (-19.28 = -19.56 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:27 2006