Locus 5445

Sequence ID 2L_DroMel_CAF1
Location 15,518,985 – 15,519,087
Length 102
Max. P 0.744424
window8644

overview

Window 4

Location 15,518,985 – 15,519,087
Length 102
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 82.57
Mean single sequence MFE -35.67
Consensus MFE -26.32
Energy contribution -26.48
Covariance contribution 0.17
Combinations/Pair 1.18
Mean z-score -1.95
Structure conservation index 0.74
SVM decision value 0.46
SVM RNA-class probability 0.744424
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15518985 102 + 22407834
CAU--GGUCCCGUCGUCCUCGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCAACACAGCGAGAUUCAAAGGGAGAGGACGAG
...--.......((((((((((((....((((((..((..(((((...........))))).))..)))))).....))))....(((....))))))))))). ( -36.00)
>DroPse_CAF1 71280 94 + 1
CGUCUGCUGCUUUUGUCCUUGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCCAGGCAGGGGGACU----------GGGCCAC
........((((..((((((.((((...((((((..((..(((((...........))))).))..))))))....)))))))))).----------))))... ( -34.10)
>DroSim_CAF1 24168 102 + 1
CAU--GGUCCCGUCGUCCUCGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCAACACAGCGAGAUUCAAAGGGAGAGGGCGAG
...--.......((((((((((((....((((((..((..(((((...........))))).))..)))))).....))))....(((....))))))))))). ( -35.40)
>DroEre_CAF1 24062 101 + 1
CUG--GGUCC-GUCGUCCUUGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCAACACAGCGAGAUUCGAGAGGAGAGGACGAG
...--....(-(((.(((((((((....((((((..((..(((((...........))))).))..)))))).....))))))).(((....))))).)))).. ( -36.20)
>DroYak_CAF1 24369 102 + 1
CUG--GGUCCCUUCGUGUUCGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCAACACAGCGAGAUUCAAGAGGAGAGGACGAG
...--.((((((((.(((((((((....((((((..((..(((((...........))))).))..)))))).....)))))))...))...)))).))))... ( -36.40)
>DroPer_CAF1 69859 94 + 1
CGUCUGCUGCUUUUGUCCUUGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCACAGGCAGGGGGACU----------GGGCCAC
........((((..((((((.((((..(((((((..((..(((((...........))))).))..)))))))...)))))))))).----------))))... ( -35.90)
>consensus
CAU__GGUCCCGUCGUCCUCGCUGCACUGUCAGCAUCAUUAUGGCUAAUAAACAUUGCCAUUUGCGGCUGGCCAACACAGCGAGAUUCAA__GGAGAGGACGAG
............((((((((((((....((((((..((..(((((...........))))).))..)))))).....))))))).(((.......)))))))). (-26.32 = -26.48 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:20 2006