Locus 5442

Sequence ID 2L_DroMel_CAF1
Location 15,501,942 – 15,502,041
Length 99
Max. P 0.593902
window8641

overview

Window 1

Location 15,501,942 – 15,502,041
Length 99
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 83.25
Mean single sequence MFE -19.72
Consensus MFE -14.10
Energy contribution -15.30
Covariance contribution 1.20
Combinations/Pair 1.07
Mean z-score -1.77
Structure conservation index 0.72
SVM decision value 0.12
SVM RNA-class probability 0.593902
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15501942 99 - 22407834
CCAACAGGAUGCAUAUUUAUGAUUGCACACACACACACUCACACACUACUCCCG--AAAUUUUGACCACACUCAAGGGCAGGCUAAAAUGCUGCCCUUGUU
......(..((((..........))))..)........................--................(((((((((.(......)))))))))).. ( -20.40)
>DroPse_CAF1 52392 75 - 1
CCAACAGAAUGCAUAUUUAUGAUUGCGCACAGAUA------CACAU-------------UCCUGACCAGGCACAAGGGCAGUCUGAUUGG-------UGUU
((((((((.(((.(((((.((......)).)))))------.....-------------.(((...........)))))).)))).))))-------.... ( -15.30)
>DroSec_CAF1 6762 93 - 1
CCAACAGGAUGCAUAUUUAUGAUUGCACACACACA------CACACUACUCCCG--AAAUUUUGACCACACUCAAGGGCAGGCUAAAAUGCUGCCCUUGUU
......(..((((..........))))..).....------.............--................(((((((((.(......)))))))))).. ( -20.40)
>DroSim_CAF1 6799 93 - 1
CCAACAGGAUGCAUAUUUAUGAUUGCACACACACA------CACACUACUCCCG--AAAUUUUGACCACACUCAAGGGCAGGCUAAAAUGCUGCCCUUGUU
......(..((((..........))))..).....------.............--................(((((((((.(......)))))))))).. ( -20.40)
>DroEre_CAF1 6635 89 - 1
CCAACAGGAUGCAUAUUUAUGAUUGCACAC----A------CACACUACUCCCG--AAAUUUUGACCACACUCAAGGGCAGGCUAAAAGGCUGCCGUUGUU
.((((.(..((((..........))))..)----.------.............--....(((((......)))))(((((.(.....).))))))))).. ( -19.40)
>DroYak_CAF1 6976 93 - 1
CCAACAGGAUGCAUAUUUAUGAUUGCACACAC--A------CACACUACUCCCCAAAAAUUUUGACCACACUCAAGGGCAGGCUAAAAGGCUGCCCUUGUU
......(..((((..........))))..)..--.------...............................(((((((((.(.....).))))))))).. ( -22.40)
>consensus
CCAACAGGAUGCAUAUUUAUGAUUGCACACACACA______CACACUACUCCCG__AAAUUUUGACCACACUCAAGGGCAGGCUAAAAGGCUGCCCUUGUU
......(..((((..........))))..)..........................................(((((((((.(......)))))))))).. (-14.10 = -15.30 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:17 2006