Locus 5441

Sequence ID 2L_DroMel_CAF1
Location 15,496,062 – 15,496,162
Length 100
Max. P 0.664716
window8640

overview

Window 0

Location 15,496,062 – 15,496,162
Length 100
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 77.70
Mean single sequence MFE -18.54
Consensus MFE -8.36
Energy contribution -10.64
Covariance contribution 2.28
Combinations/Pair 1.16
Mean z-score -1.95
Structure conservation index 0.45
SVM decision value 0.28
SVM RNA-class probability 0.664716
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15496062 100 + 22407834
CCACAUGCACUCUCUAAUCUAGCCAUUGUCUCUUCUUCGGCACUCCUGCACUCAUUCGAAAUUUUCCUAGUGACUGGAGUACGACCCCAAAGC--AAACACA-
.....(((.............(((...(......)...)))(((((..((((................))))...)))))...........))--)......- ( -16.19)
>DroSec_CAF1 940 93 + 1
CCAC------UUUGUAAUCUAGCCAUUGUCUCUUCUUCGGCACUCCUGCACUCAUUCGAAAUUUUCCUAGUGGCUGGAGUACGACCUCAAACC--AAACAC--
....------.(((((.(((((((((((.......(((((((....))).......)))).......))))))))))).))))).........--......-- ( -21.05)
>DroSim_CAF1 953 91 + 1
CCAC------U--GUAAUCUAGCCAUUGUCUCUUCUUCGGCACUCCUGCACUCAUUCGAAAUUUUCCUAGUGGCUGGAGUACGACCCCAAACC--AAACAC--
....------(--(((.(((((((((((.......(((((((....))).......)))).......))))))))))).))))..........--......-- ( -19.95)
>DroEre_CAF1 908 83 + 1
-------UGAUCUAUAAUCUAGUCAGUGUCCCUUCUGCGGGACUCCUGCACUCAUUCGGAAUUUUCCUAAAGAC-----------CCCAAACC--AAACACAC
-------..........(((((((((.(((((......)))))..))).))).....(((....)))...))).-----------........--........ ( -15.00)
>DroYak_CAF1 908 98 + 1
UUA----UACUCUGUAAUUUAGCCAGUGUCUGUUCUUUGGCACUCCUGCACUCAAUCGAAACUUUCCUAGUGGCUGGUGUACGG-CCCAAACCCCAAACACCA
...----.............((((((((((........))))))................(((.....)))))))(((((..((-........))..))))). ( -20.50)
>consensus
CCAC______UCUGUAAUCUAGCCAUUGUCUCUUCUUCGGCACUCCUGCACUCAUUCGAAAUUUUCCUAGUGGCUGGAGUACGACCCCAAACC__AAACAC__
.............(((.(((((((((((.......(((((...............))))).......))))))))))).)))..................... ( -8.36 = -10.64 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:16 2006