Locus 544

Sequence ID 2L_DroMel_CAF1
Location 1,678,842 – 1,678,951
Length 109
Max. P 0.629270
window878

overview

Window 8

Location 1,678,842 – 1,678,951
Length 109
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.09
Mean single sequence MFE -26.95
Consensus MFE -23.02
Energy contribution -24.15
Covariance contribution 1.13
Combinations/Pair 1.06
Mean z-score -1.50
Structure conservation index 0.85
SVM decision value 0.20
SVM RNA-class probability 0.629270
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1678842 109 + 22407834
GUAUUCUUUUCUCUUUUUACUUACAGGUAACUAUGAU---------CAGCCAAGCGUUUUCCCAGUGGGCUCAAAGUUAUCGUGUCUGUGAGUUU--AGAAUAGAACACAAUUGUGUCUC
((.((((.((((...(((((..((((((((((.(((.---------..(((..((.........)).)))))).))))))).)))..)))))...--)))).)))).))........... ( -26.60)
>DroSec_CAF1 5238 111 + 1
GUAUUCUUUUCUCUUUUUACUUACAGGUAACUAUGAU---------CAGCCAAGCGUUUUCCCAGUGGGGUCAAAGUUAUCGUGUCUGUAAGUUUAUAGAAUAGAAUACAAUCGUGUCUC
(((((((.((((...(((((..((((((((((.((((---------(.((...)).....((....))))))).))))))).)))..))))).....)))).)))))))........... ( -30.00)
>DroSim_CAF1 6219 111 + 1
GUAUUCUUUUCUCUUUUUACUUACAGGUAACUAUGAU---------CAGCCAAGCGUUUUCCCAGUCGGGUCAAAGUUAUCGUGUCUGUAAGUUUAUAGAAUAGAACACAAUCGUGUCUC
((.((((.((((...(((((..((((((((((.(((.---------..((...)).....(((....)))))).))))))).)))..))))).....)))).)))).))........... ( -24.90)
>DroYak_CAF1 6386 118 + 1
GAAUACUUCUCUCUUUCUACUUACAGGUAGCUAUGCUUUCUGUGGCCAGCCAAGCGUUUUCCAACUGGGGUCAAAGCUAUCAUGUCUGUGAGUUU--AGAAUAGAAUACAAACAGUCGCC
.........(((..((((((((((((..(.....((((....(((((.((...)).....((....))))))))))).....)..))))))))..--)))).)))............... ( -26.30)
>consensus
GUAUUCUUUUCUCUUUUUACUUACAGGUAACUAUGAU_________CAGCCAAGCGUUUUCCCAGUGGGGUCAAAGUUAUCGUGUCUGUAAGUUU__AGAAUAGAACACAAUCGUGUCUC
(((((((.((((......((((((((((((((.((((...........((...)).....((.....)))))).)))))).....))))))))....)))).)))))))........... (-23.02 = -24.15 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:55 2006