Locus 5433

Sequence ID 2L_DroMel_CAF1
Location 15,475,734 – 15,475,832
Length 98
Max. P 0.843068
window8627

overview

Window 7

Location 15,475,734 – 15,475,832
Length 98
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 78.57
Mean single sequence MFE -25.00
Consensus MFE -16.69
Energy contribution -17.08
Covariance contribution 0.39
Combinations/Pair 1.32
Mean z-score -1.67
Structure conservation index 0.67
SVM decision value 0.76
SVM RNA-class probability 0.843068
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15475734 98 + 22407834
AUGUCCUCACAUCCU-ACCUGGUGGGUCAUCCCGGAUAUCUCGGUUAUUACGUGUGUUAUUCCGCGCAAU-GAUC-GCCAUGUCACAUCCAUGCACAUAUC
((((((......((.-....)).(((....)))))))))..((((((((.((((........)))).)))-))))-)..((((((......)).))))... ( -22.30)
>DroVir_CAF1 250682 95 + 1
AUGCCUCCCGGUCCU-ACCUGACGGGCGUUCCCGGCUAUUUCGGUUAUUACGUGUGUUAUUCCACACAAU-UACCAUCCAUGGCAUCUCCAGGCA----AC
.(((((...((....-.))...((((....))))(((((...(((.(((..(((((......))))))))-.)))....)))))......)))))----.. ( -25.70)
>DroSec_CAF1 213716 98 + 1
AUGUCCUCACAUCCU-ACCUGGUGGGUCAUCCCGGAUAUCUCGGUUAUUACGUGUGUUAUUCCGCGCAAU-GAUC-GCCAUGACACAUCCAUGCGCAUAUC
((((((......((.-....)).(((....)))))))))...(((((((.((((........)))).)))-))))-((((((.......)))).))..... ( -25.90)
>DroEre_CAF1 224386 98 + 1
ACCUCCUCACAUCCU-ACCUGGUGGGUCAUCCCGGAUAUCUCGGUUAUUACGUGUGUUAUUCCGCGCAAU-GAUC-GCCAUGACACAUCCAGGCACAUAUC
...............-.(((((((.(((((...((......((((((((.((((........)))).)))-))))-)))))))).)).)))))........ ( -25.00)
>DroMoj_CAF1 262095 95 + 1
AUGCCUCCCGAUCCU-ACCUGACGGGCGUUCCCGACCAUUUCGGUUAUUACGUGUGUUAUUCCGCACAAU-UACCAACCAUGGCAUCCACAGGCA----AC
.(((((...(((((.-......((((....))))........((((......(((((......)))))..-....))))..)).)))...)))))----.. ( -25.30)
>DroAna_CAF1 229621 92 + 1
----UCACACAUCCUGACCUGGUGGGUCAUCCCGGAUACUCUGGUUAUUACGUGUGUUAUUCCGCGCAAUUAACC-GCCAUGACACAUCCAGGCAC----C
----..........((.(((((((.(((((..(((........((....))(((((......)))))......))-)..))))).)).))))))).----. ( -25.80)
>consensus
AUGUCCUCACAUCCU_ACCUGGUGGGUCAUCCCGGAUAUCUCGGUUAUUACGUGUGUUAUUCCGCGCAAU_GACC_GCCAUGACACAUCCAGGCAC___UC
.................(((((...(((((.((((.....)))).......(((((......)))))............)))))....)))))........ (-16.69 = -17.08 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:04 2006