Locus 5410

Sequence ID 2L_DroMel_CAF1
Location 15,423,877 – 15,423,993
Length 116
Max. P 0.585762
window8585

overview

Window 5

Location 15,423,877 – 15,423,993
Length 116
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.04
Mean single sequence MFE -35.40
Consensus MFE -22.20
Energy contribution -22.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.21
Structure conservation index 0.63
SVM decision value 0.10
SVM RNA-class probability 0.585762
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15423877 116 + 22407834
UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGUCAUUAAUUUGCCGCCGUCAAGGUGGCAA-GGCAGC--GAGUAUCUGCGGAUCGGGGCAUCCAAC-UUCAAA
.....(((((...((((((((...(.((((.((((((.((.....)).)))))).(((((((((.....))))))))-)...))--)).)...))))).))).))))).....-...... ( -42.90)
>DroSec_CAF1 169567 110 + 1
UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGUCAUUAAUUUGCCGCCGUCAAGGUGGCAA-GGCAGC--GAGUAUCUGCGUAUCGGGGCAUCCAAC-------
.....(((((...(((..((.((((.((((.((((((.((.....)).)))))).(((((((((.....))))))))-)...))--))...)))).)).))).))))).....------- ( -38.20)
>DroSim_CAF1 175064 110 + 1
UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGUCAUUAAUUUGCCGCCGUCAAGGUGGCAA-GGCAGC--GAGUAUCUGCGGAUCGGGGCAUCCAAC-------
.....(((((...((((((((...(.((((.((((((.((.....)).)))))).(((((((((.....))))))))-)...))--)).)...))))).))).))))).....------- ( -42.90)
>DroEre_CAF1 176598 106 + 1
UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGCCAUUAAUUUGCCGCCGUCAAGGUGGCAA-GGC---------AAC----CAUCCAACCAUCCAAACAGCCGA
.............((((.((((....(((.....))).))))....((((......((((((((.....))))))))-)))---------)..----..................)))). ( -30.20)
>DroYak_CAF1 177019 109 + 1
UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGCCAUUAAUUUGCCGCCGUCAAGGUGGCAA-GU----------AUCUGGGGAUUGGGGCAUCCAACCAUCCGA
.............(((.....((((...((((......))))............((((((((((.....))))))))-))----------.)))).((.((((.....))))))..))). ( -32.90)
>DroAna_CAF1 177883 105 + 1
UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGUCAUUAAUUUGCCGCCGUCAAGGUGGCAUUUGCUGCAAGAGUAUCUGAG--------UUUCUAAG-------
.....(((((....)).))).((((.((((((......))))....((.((.(((..(((((((.....))))))).))).)))).))...))))..--------........------- ( -25.30)
>consensus
UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGUCAUUAAUUUGCCGCCGUCAAGGUGGCAA_GGCAGC__GAGUAUCUGCGGAUCGGGGCAUCCAAC_______
....((((.((...((((.....).)))((((......))))....)).))))....(((((((.....)))))))............................................ (-22.20 = -22.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:25 2006