Locus 5405

Sequence ID 2L_DroMel_CAF1
Location 15,411,549 – 15,411,651
Length 102
Max. P 0.993337
window8579

overview

Window 9

Location 15,411,549 – 15,411,651
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 89.02
Mean single sequence MFE -19.80
Consensus MFE -18.04
Energy contribution -17.88
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -2.02
Structure conservation index 0.91
SVM decision value 2.39
SVM RNA-class probability 0.993337
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15411549 102 + 22407834
CAAUAAAAUAAAUAGCCCUAACUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGUCUAGACAAAUGACUCGGGUUAUUUGUCAGCAAUUGAACACAUCA
((((...(((((((((((.........((((((..(((....)))..))))))(.((((.........)))))))))))))))).....))))......... ( -19.70)
>DroSec_CAF1 157387 102 + 1
CAAUAAAGUAAAUAGCCCUAAUUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAUCA
((((((.(((...((...(((((((.....))))))).))...))).))))))...((...((((((((((....)))))))))).)).............. ( -18.60)
>DroSim_CAF1 162339 102 + 1
CAAUAAAGUAAAUAGCCCUAAUUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAUCA
((((((.(((...((...(((((((.....))))))).))...))).))))))...((...((((((((((....)))))))))).)).............. ( -18.60)
>DroEre_CAF1 164094 102 + 1
CAAUAAAAUAAAUAGCCCUAGUUUGAACAAUAACUUAUCUUGAUGUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAUCA
....................(((..(.((((((..(((....)))..))))))...((...((((((((((....)))))))))).))..)..)))...... ( -21.20)
>DroYak_CAF1 164523 90 + 1
----------AAUAGCACUG--UUAAACAAUAACUUAUCGUGAUAUAUUAUUGGCAGCCCGGACAAAUGACUUGAGUUAUUUGUCAGCAAUUGAACACAUGG
----------....((.(((--(....((((((..(((....)))..))))))))))....((((((((((....)))))))))).)).............. ( -20.90)
>consensus
CAAUAAAAUAAAUAGCCCUAAUUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAUCA
..............((...........((((((..(((....)))..))))))........((((((((((....)))))))))).)).............. (-18.04 = -17.88 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:19 2006