Locus 54

Sequence ID 2L_DroMel_CAF1
Location 216,319 – 216,427
Length 108
Max. P 0.558607
window77

overview

Window 7

Location 216,319 – 216,427
Length 108
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 74.03
Mean single sequence MFE -34.10
Consensus MFE -16.23
Energy contribution -16.62
Covariance contribution 0.39
Combinations/Pair 1.27
Mean z-score -1.73
Structure conservation index 0.48
SVM decision value 0.05
SVM RNA-class probability 0.558607
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 216319 108 - 22407834
UCUGGACAGUUCAGCAAGCCAGCUGUCCCCGCAAUGAAGACUCCUCCUCCCUCAAUGGGUGCACCAAUGGACCUUUCAUCAAGGUGUGUUC--UUUAAAAUAGGUCAUUA
...((((((((..(....).))))))))((....((((((........(((.....))).(((((.(((((...)))))...)))))..))--)))).....))...... ( -25.40)
>DroVir_CAF1 11452 96 - 1
UCCGGACAGUUCAAUAAGCCCGCUGUGCCGGCACUGAAAACGCCGCCACCAUCAAUGGGUGCACCCAUGGAUCUGUCCUCCAGGUGUGUAA--------------UCCUU
...((((((.((............(((.((((.........)))).))).....(((((....))))).)).))))))...(((.......--------------.))). ( -28.80)
>DroPse_CAF1 10221 102 - 1
UCCGGGCAAUUCAGCAAGCCCGCUGUGCCGGCAAUGAAGACGCCACCACCAUCCAUGGGGGCACCCAUGGAUCUGUCCUCAAGGUGAGGAU-----CGCACAG---AUUC
..(((((..........)))))((((((.(((.........)))......(((((((((....)))))))))..((((((.....))))))-----.))))))---.... ( -44.20)
>DroGri_CAF1 9818 105 - 1
UCCGGCCAGUUCAAUAAGCCCGCUGUGCCAGCGCUAAAAACACCGCCACCCUCAAUGGGUGCACCCAUGGAUCUGUCUUCCAGGUGCGUCAAUUUG-----AGAUUGUUU
...(((((((...........)))).))).(((..........)))((..(((((..(..(((((..((((.......)))))))))..)...)))-----))..))... ( -30.30)
>DroWil_CAF1 10302 110 - 1
UCUGGACAAUUUAGUAAACCAGCUGUGCCAGCUCUUAAAACACCGCCACCAUCAAUGGGUGCACCUAUGGAUCUGUCCUCAAGGUGGGUGUGCUUGGGAAUAGAUCUUUA
.((((.((...((((......)))))))))).((((((.(((((..((((.......))))(((((..(((....)))...))))))))))..))))))........... ( -31.70)
>DroPer_CAF1 10357 102 - 1
UCCGGGCAAUUCAGCAAGCCCGCUGUGCCGGCAAUGAAGACGCCACCACCAUCCAUGGGGGCACCCAUGGAUCUGUCCUCAAGGUGAGGAU-----CGCACAG---AUUC
..(((((..........)))))((((((.(((.........)))......(((((((((....)))))))))..((((((.....))))))-----.))))))---.... ( -44.20)
>consensus
UCCGGACAAUUCAGCAAGCCCGCUGUGCCGGCAAUGAAAACGCCGCCACCAUCAAUGGGUGCACCCAUGGAUCUGUCCUCAAGGUGAGUAU______G_A_AG___AUUA
.((((.((...((((......)))))))))).........((((..........(((((....)))))(((....)))....))))........................ (-16.23 = -16.62 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:24 2006