Locus 5399

Sequence ID 2L_DroMel_CAF1
Location 15,393,776 – 15,393,869
Length 93
Max. P 0.985982
window8572

overview

Window 2

Location 15,393,776 – 15,393,869
Length 93
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 69.42
Mean single sequence MFE -22.08
Consensus MFE -10.08
Energy contribution -10.08
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.24
Structure conservation index 0.46
SVM decision value 2.03
SVM RNA-class probability 0.985982
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15393776 93 - 22407834
UUGCAUUGCAAAACACCCCAAAAAUAAUACUAUUUUUGGUCCGCAUUCUCCU--------------CUAUGCGGGAUUCAUGAAGUUAUUCCUUGCUUUAUGUCCCG
((((...))))......(((((((((....)))))))))...((((......--------------..))))((((..((((((((........)))))))))))). ( -25.90)
>DroSec_CAF1 139536 99 - 1
UUCCAUUAAAAAAAAUCCC--UAAUAUU------UUUGGUUCGCAGUCUCCUAUCGCCGCCAGCCUUUAUGGUGGAUUCAUGAAGUUAUUUCUUGCUUUAUGUCCGG
.(((((((..((((((...--....)))------)))((((.((.((........)).)).))))....)))))))..((((((((........))))))))..... ( -19.70)
>DroSim_CAF1 144478 103 - 1
UUCCAUUACAAAAAUCCCA--AAAUACUACUA--UUUUGGUCGCAUUCUCCUAUCGCCACCAGCCCUUAUGGUGGAUUCAUGAAGUUAUUCCUUGCUUUAUGUCCGG
..((............(((--(((((....))--))))))................((((((.......))))))...((((((((........))))))))...)) ( -22.80)
>DroEre_CAF1 145884 87 - 1
UUCUAUAGCAGAACACCCUG-AAAUACUACUAUUUCUGGUC-------------------CAACCUCUACUGGGGAUUCAUGAAGUUAUUCCUAGCUUUAUGUCCGC
.......((.((..(((..(-(((((....)))))).))).-------------------...((((....))))...((((((((((....)))))))))))).)) ( -19.60)
>DroYak_CAF1 146669 106 - 1
UUUCGAUGCCUAACACCGCG-AAGUACUUCUAUUUUUGGUCCGCAUCCUCCUAUCGCCACCACGCUCUAUUGGGGAUUCAUGAAGUUAUUCCUUGCUUUAUGUCCGG
....(((((.....((((.(-(((((....))))))))))..))))).........((.(((........)))(((..((((((((........))))))))))))) ( -22.40)
>consensus
UUCCAUUGCAAAACACCCC__AAAUACUACUAUUUUUGGUCCGCAUUCUCCUAUCGCC_CCAGCCUCUAUGGGGGAUUCAUGAAGUUAUUCCUUGCUUUAUGUCCGG
.........................................................................(((..((((((((........))))))))))).. (-10.08 = -10.08 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:12 2006