Locus 5388

Sequence ID 2L_DroMel_CAF1
Location 15,370,656 – 15,370,764
Length 108
Max. P 0.558910
window8551

overview

Window 1

Location 15,370,656 – 15,370,764
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 95.25
Mean single sequence MFE -20.17
Consensus MFE -16.64
Energy contribution -17.17
Covariance contribution 0.53
Combinations/Pair 1.04
Mean z-score -1.89
Structure conservation index 0.82
SVM decision value 0.05
SVM RNA-class probability 0.558910
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15370656 108 + 22407834
AAAUGUGCCUGACAAAAAUAGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGUGGCACAAUAAAUCACACGCUCAAAAGCUAGCGAUAAAAAUUAAUCACAAUGGUC
...((((((....((((((.(((.....)))))))))...((((....))))..))))))..........((((........))))...................... ( -20.10)
>DroSec_CAF1 116464 108 + 1
AAAUGUGCCUGACAAAAAUUGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGCGGCACAAUAAAUCACACGCUCAAAAGCCAGCGAUAAAAAUUAAUCACAAUGGUC
...((((((.....((((.((((.....)))).))))...((((....))))..))))))..........((((........))))...................... ( -21.10)
>DroSim_CAF1 120559 108 + 1
AAAUGUGCCUGACAAAAAUUGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGCGGCACAAUAAAUCACACGCUCAAAAGCCAGCGAUAAAAAUUAAUCACAAUGGUC
...((((((.....((((.((((.....)))).))))...((((....))))..))))))..........((((........))))...................... ( -21.10)
>DroEre_CAF1 122818 108 + 1
AAAUGUGCCUGACAAAAAUUGCAUAGCUUGCAUUUUUAAAUGAUUUAUAUCACUGGCACAAUAAAUCACACGCUCAAAAGCCAGCGAUAAAAAUUAAUCACAAUGGUC
...((((.......((((.((((.....)))).))))...((((((.((((.(((((......................))))).)))).))))))..))))...... ( -22.35)
>DroYak_CAF1 122584 108 + 1
AAAUGUGCCUGACAAAAAUGGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGCGGCACAAUAAAUCACACGCUCAAAGGCAAGCGAUAAAAAUUAAUCACAAUGGUC
...((((((..........)))(((((((((.........((((....))))(((...............)))......)))))))))...........)))...... ( -22.06)
>DroAna_CAF1 124309 107 + 1
AAAUGUGCCUGACAAAAAUUGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGUGCGACAAUAAAUCAC-CGCUCAAAAGCCGCCUAUAAAAAUUAAUCACAAUAGUC
...((((.......((((.((((.....)))).))))...((((((.(((.((.(((............-.(((....))))))))))).))))))..))))...... ( -14.31)
>consensus
AAAUGUGCCUGACAAAAAUUGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGCGGCACAAUAAAUCACACGCUCAAAAGCCAGCGAUAAAAAUUAAUCACAAUGGUC
...((((((....((((((.(((.....)))))))))...((((....))))..))))))..........((((........))))...................... (-16.64 = -17.17 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:53 2006