Locus 538

Sequence ID 2L_DroMel_CAF1
Location 1,675,837 – 1,675,957
Length 120
Max. P 0.622723
window859

overview

Window 9

Location 1,675,837 – 1,675,957
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -36.80
Consensus MFE -35.75
Energy contribution -35.87
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.56
Structure conservation index 0.97
SVM decision value 0.18
SVM RNA-class probability 0.622723
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1675837 120 - 22407834
GAAUCUAUGCCUGCAGAUUGGGCGGCCACAUCGCCUGGCCUCCCUCGUGUUUUUAGGCCGAUCCUUUGUCCCUCGCAGUGCAUUGAUUAGAAUGUUUGGACUUGAGUACGUAAAUAUUUU
.((((.((((((((.....(((.(((((.......))))).)))(((.(((....)))))).............)))).)))).))))((((((((((.((....))...)))))))))) ( -35.80)
>DroSec_CAF1 2304 119 - 1
GAAUCUAUGCCUGCAGAUUGGGCGGCCACAUCGCCUGGCCUCCCUCGCCU-UUUAGGCCGAUCCUUUGUCCCUCGCAGUGCAUUGAUUAGAAUGUUUGGACUUGAGUACGUAAAUAUUUU
.((((.((((((((.....(((.(((((.......))))).)))(((((.-....)).))).............)))).)))).))))((((((((((.((....))...)))))))))) ( -37.30)
>DroSim_CAF1 3187 119 - 1
GAAUCUAUGCCUGCAGAUUGGGCGGCCACAUCGCCUGGCCUCCCUCGCCU-UUUAGGCCGAUCCUUUGUCCCUCGCAGUGCAUUGAUUAGAAUGUUUGGACUUGAGUACGUAAAUAUUUU
.((((.((((((((.....(((.(((((.......))))).)))(((((.-....)).))).............)))).)))).))))((((((((((.((....))...)))))))))) ( -37.30)
>consensus
GAAUCUAUGCCUGCAGAUUGGGCGGCCACAUCGCCUGGCCUCCCUCGCCU_UUUAGGCCGAUCCUUUGUCCCUCGCAGUGCAUUGAUUAGAAUGUUUGGACUUGAGUACGUAAAUAUUUU
.((((.((((((((.....(((.(((((.......))))).)))((((((....))).))).............)))).)))).))))((((((((((.((....))...)))))))))) (-35.75 = -35.87 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:38 2006