Locus 5376

Sequence ID 2L_DroMel_CAF1
Location 15,292,418 – 15,292,519
Length 101
Max. P 0.961291
window8533

overview

Window 3

Location 15,292,418 – 15,292,519
Length 101
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 78.70
Mean single sequence MFE -40.18
Consensus MFE -22.71
Energy contribution -24.77
Covariance contribution 2.06
Combinations/Pair 1.23
Mean z-score -2.64
Structure conservation index 0.57
SVM decision value 1.52
SVM RNA-class probability 0.961291
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15292418 101 - 22407834
GAUCACCUGGCACUUGGC--CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAUG------GCCAGGGCCACAGUCGAGGCAAGUGGAGUCUCUA
.........(((.(((((--(((..(((....)))..)))))))).)))((..(((((...((((..((------((....))))..).)))....)))))..)).... ( -44.30)
>DroSec_CAF1 39550 101 - 1
GAUCACCUGGCACUUGGC--CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAUG------GCCAGGGCCACAGCCGAGGCAAGUGGAGUCUCUA
(((..(((((((.(((((--(((..(((....)))..)))))))).)))...(((((.........)))------)))))).((((.((....))..)))).))).... ( -45.10)
>DroSim_CAF1 40338 101 - 1
GAUCACCUGGCACUUGGC--CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAUG------GCCAGGGCCACAGCCGAGGCAAGUGGAGUCUCUA
(((..(((((((.(((((--(((..(((....)))..)))))))).)))...(((((.........)))------)))))).((((.((....))..)))).))).... ( -45.10)
>DroEre_CAF1 43177 96 - 1
GAUCGGCUGGCA-------CUUGGCCCACAGAUGGGUCAGGGCAAUUGCGAGGCCAUUAUAUCGCCAUU------GCCAGGGCCACAGCCAUGGCAAGUGGAGUCUCUA
....(((((((.-------(((((((((....)))))))))((....))...))).........(((((------((((.(((....))).)))).))))))))).... ( -41.00)
>DroYak_CAF1 41763 109 - 1
GAUCACCUGGCACUUGGCACUUGGCCCAGAGUUGGGUCAGGCCAAUUGCGAAGGCAUUAUAUCGCCAUGACCACGGCCAGGGCCACAGACAAGGUAAGUGGAGUCUCUA
(((..(((.((.((((...((((((((.(.((((((((((((....(((....))).......))).))))).))))).)))))).)).)))))).)).)..))).... ( -42.50)
>DroAna_CAF1 44505 78 - 1
GAUCACCUGGCAGACGUU-------C--GAGACGGGUCAGGCCAAUUCCAGAGCCAUUAAAUGGCCAGA------GCCAGGACCA--------GCAAGUGG--------
.....((((((...((((-------.--..))))(((((((((.......).)))......)))))...------)))))).(((--------.....)))-------- ( -23.10)
>consensus
GAUCACCUGGCACUUGGC__CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAUG______GCCAGGGCCACAGCCGAGGCAAGUGGAGUCUCUA
.....((((((....(((..(((((((......))))))))))....((((..........))))..........)))))).((((.((....))..))))........ (-22.71 = -24.77 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:35 2006