Locus 5375

Sequence ID 2L_DroMel_CAF1
Location 15,288,499 – 15,288,597
Length 98
Max. P 0.908591
window8532

overview

Window 2

Location 15,288,499 – 15,288,597
Length 98
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 74.51
Mean single sequence MFE -26.85
Consensus MFE -11.10
Energy contribution -11.30
Covariance contribution 0.20
Combinations/Pair 1.38
Mean z-score -2.29
Structure conservation index 0.41
SVM decision value 1.06
SVM RNA-class probability 0.908591
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15288499 98 + 22407834
--CAAAGGAGUUCCUUCGAAAAAUUGUCAAAUGUU---GUAGGGU-----CCUCGGAUACCUGGCAACAGAAAUGGAGCUCGGAAGAGACUUCAUCAAAAGGACGUUA
--(.((((....)))).).......(((...((((---(((((((-----(....))).))).))))))...(((((((((....))).))))))......))).... ( -29.70)
>DroSec_CAF1 35556 98 + 1
--CAAAGGAGUUCCUUUGAAAAAUUGUCAAAUGUU---GUAGGGU-----CCUCGGAUACCUGGCAACAGAAAUGGAGCUCGGAAGAGACUUCAUCAAAAGGACGUUA
--((((((....)))))).......(((...((((---(((((((-----(....))).))).))))))...(((((((((....))).))))))......))).... ( -33.80)
>DroSim_CAF1 36350 98 + 1
--CAAAGGAGUUCCUUUGAAAAAUUGUCAAAUGUU---GUAGGGU-----CCUCGGAUACCUGGCAACAGAAAUGGAGCUCGGAAGAGACUUCAUCAAAAGGACGUUA
--((((((....)))))).......(((...((((---(((((((-----(....))).))).))))))...(((((((((....))).))))))......))).... ( -33.80)
>DroEre_CAF1 39039 83 + 1
--CUAAGGAGUUCCUCG---------------GUC---CUCGGGU-----CCUCGGAUACCUGGGCAUAGAAAUGGAGCUCGGAAGAGAAUUCUUCGAAAGGACGUUA
--.....(((((((((.---------------(((---(..((((-----(....))).)).))))...))...))))))).((((......))))............ ( -24.70)
>DroWil_CAF1 60379 98 + 1
ACCAAAUGAAUUCCUUUUAAAACU--CCAUUGGCUAUAGUAUAGUUUUGGCUUGGUUUACAU---AACAAAAAAGAAA-----AAAAAAGAUUUUCAAAUUGACGUUA
......((((...(((((......--(((..((((((...)))))).)))(((.(((.....---)))....)))...-----..)))))...))))........... ( -10.00)
>DroYak_CAF1 37658 98 + 1
--UAAAGGAGUUCCCUUGAAAAUUUUCCAAAUGUU---GUAGGGU-----CCUCGGAUACCUGGCAACAGAAAUGGAGCUCGGAAGAGACAUCUUCAAAAGGACGUUA
--.......((((..(((((....(((((..((((---(((((((-----(....))).))).))))))....)))))(((....))).....)))))..)))).... ( -29.10)
>consensus
__CAAAGGAGUUCCUUUGAAAAAUUGUCAAAUGUU___GUAGGGU_____CCUCGGAUACCUGGCAACAGAAAUGGAGCUCGGAAGAGACUUCAUCAAAAGGACGUUA
.......(((((((...........................(((.......)))......(((....)))....)))))))........................... (-11.10 = -11.30 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:34 2006