Locus 5370

Sequence ID 2L_DroMel_CAF1
Location 15,253,048 – 15,253,146
Length 98
Max. P 0.547947
window8525

overview

Window 5

Location 15,253,048 – 15,253,146
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.03
Mean single sequence MFE -26.63
Consensus MFE -16.40
Energy contribution -15.73
Covariance contribution -0.66
Combinations/Pair 1.46
Mean z-score -1.44
Structure conservation index 0.62
SVM decision value 0.03
SVM RNA-class probability 0.547947
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15253048 98 - 22407834
CUUUCAGCUUCUGUGGACGCAGCGAAGCUAUUUGCUUUCAUCCUGUUGAAUAAGUUUGGUUCUUUCGCUGAUUGCUAUGAGGGCCAUUUUGAUUUGAG
..((((((....(((((...((((((....)))))))))))...))))))((((((((((((((..((.....))...))))))))....)))))).. ( -24.80)
>DroSec_CAF1 465 98 - 1
CUAUCAGCUUCUGUGGACCCAGCGGAGCUAUUUGCUUUCAUCCUGUUGGAUAAGUUUGGUUCUUUCGCUGAUUGCUAUCAGGGCCAUUUUGAUUUGGG
...((((..((.((((.(((((((((((((...((((..((((....)))))))).))))))...))))(((....))).)))))))...)).)))). ( -29.10)
>DroSim_CAF1 98 98 - 1
CUAAUAGCUUCUGUGGACGCAGCGGAGUUAUUUGCUUUCAUCCUGUUGGAUAAGUUUGGUUCUUUCGCUGAUUGCUAUCAGAGCCAUUUUGAUUUGGG
........((((((((...((((((((..(((.((((..((((....))))))))..)))..))))))))....))).)))))(((........))). ( -26.60)
>DroEre_CAF1 464 97 - 1
-AAUGUGCGUCUGUGGACGCAGUGCGGCUACUUGUUCUCAUCCUGCUGAAUUAGUUUGGCCCUUUCGCUGAUGGCUAUCAGGGCCAUUUUGAUUUGGG
-....((((((....))))))........................(..((((((..(((((((...((.....))....)))))))..))))))..). ( -32.20)
>DroYak_CAF1 419 97 - 1
-UAUCUGCUUCUGUGGAGGCAGUUAGACUACUUGUUCUCAUCCUGCUGAAUUAGUUUGGCUCUUUCGCUGAUUGCUAUUAGUGCCAUUUUGAUUUGGG
-...(((((((....))))))).......................(..((((((..((((.((...((.....))....)).))))..))))))..). ( -27.20)
>DroAna_CAF1 371 83 - 1
CUAUC------UCU------A---GUUCUAGUUGGUAACCUCGGGUUGAAUAAGCUUGGCUCUUUCGCUGAUGGCAAUCAGGGCCAUUUUGAUUUGGG
.((((------.((------(---....)))..))))..(((((((..((......(((((((...((.....))....))))))).))..))))))) ( -19.90)
>consensus
CUAUCAGCUUCUGUGGACGCAGCGGAGCUAUUUGCUUUCAUCCUGUUGAAUAAGUUUGGCUCUUUCGCUGAUUGCUAUCAGGGCCAUUUUGAUUUGGG
..............(((...((((((....))))))....)))..(..(((.((..(((((((...((.....))....)))))))..)).)))..). (-16.40 = -15.73 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:27 2006