Locus 5359

Sequence ID 2L_DroMel_CAF1
Location 15,182,333 – 15,182,427
Length 94
Max. P 0.575554
window8509

overview

Window 9

Location 15,182,333 – 15,182,427
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 90.88
Mean single sequence MFE -20.35
Consensus MFE -15.28
Energy contribution -15.64
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.64
Structure conservation index 0.75
SVM decision value 0.08
SVM RNA-class probability 0.575554
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15182333 94 - 22407834
AUAUAUAAAAAGUAUGGCAAAAGUUGCUGUUGCGGUUGAAGUGGUUGAUGCUUCAAGGAGCAAUAAAAACCGCAGAUAAAUUUAGAGCAGAC--UU
.........((((...((..(((((....((((((((.......(((.(((((....))))).))).))))))))...)))))...))..))--)) ( -22.10)
>DroSec_CAF1 127331 94 - 1
AUAUAUAAAAAGUAUGGCAAAAGUUGCUGUUGCGGUUGAAGUGGUUGAUGCUUCAAGGAGCAAUAAAAACCGCAGAUAAAUUCAGAGCAGAC--UU
.........((((..((((.....)))).((((..(((((((((((..(((((....))))).....)))))).......))))).))))))--)) ( -21.31)
>DroSim_CAF1 130372 93 - 1
AUAUAUAAAAAGU-UAGCAAAAGUUGCUGUUGCGGUUGAAGUGGUUGAUGCUUCAAGGAGCAAUAAAAACCGCAGAUAAAUUUAGAGCAGAC--UU
.........((((-(.((..(((((....((((((((.......(((.(((((....))))).))).))))))))...)))))...)).)))--)) ( -23.10)
>DroEre_CAF1 130419 93 - 1
AUAUAUAAAGAGUAUGA---UUUUUGCUGUUGCGGUUGAAGUGGUUGAUGCUUCAAGGAGCAAUAAAAACCGCAGAUAAAUUUGGAGCAGACUUUU
.......((((((.((.---(((......((((((((.......(((.(((((....))))).))).))))))))........))).)).)))))) ( -20.14)
>DroYak_CAF1 143019 95 - 1
AUAUAUAAAAACUAUGGCAAAAGUUGCUGUUGCGGUUGAAGUGUUUGAUGCUUCAAGGAG-AUUCAAAACCACAGAUAAAUUCAGAGCAGACAUUU
...............((((.....)))).(((((((((((.(.(((((....))))).).-.))))..)))...((.....))...))))...... ( -15.10)
>consensus
AUAUAUAAAAAGUAUGGCAAAAGUUGCUGUUGCGGUUGAAGUGGUUGAUGCUUCAAGGAGCAAUAAAAACCGCAGAUAAAUUUAGAGCAGAC__UU
.......................(((((..(((((((.......(((.(((((....))))).))).)))))))((.....))..)))))...... (-15.28 = -15.64 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:12 2006