Locus 5353

Sequence ID 2L_DroMel_CAF1
Location 15,163,999 – 15,164,099
Length 100
Max. P 0.915244
window8502

overview

Window 2

Location 15,163,999 – 15,164,099
Length 100
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 73.54
Mean single sequence MFE -21.23
Consensus MFE -7.08
Energy contribution -9.60
Covariance contribution 2.52
Combinations/Pair 1.24
Mean z-score -2.02
Structure conservation index 0.33
SVM decision value 1.10
SVM RNA-class probability 0.915244
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15163999 100 + 22407834
UAUACACACGCACCGCAAGCUCACCAAACGCACA----------CACAUAUGUAUGUUCGUUGGAGUGGACCACAUAUGAACUUAAAGUUUUUAUGAUUCUAA--AAGCUGC
..............(((.(((..((((.((.(((----------.((....)).))).))))))..((((...((((.((((.....)))).))))..)))).--.)))))) ( -19.80)
>DroSec_CAF1 108997 96 + 1
UAUACACACGCACCGCAAGCUCACCAAGCGCACA----------CACAUAUG----UGCGUUGGAGUGGACCACAUAGGAACUUAAAGUUUUUAUGAUUCUAA--AAUCUGC
..............(((.((((....((((((((----------......))----)))))).))))(((...(((((((((.....)))))))))..)))..--....))) ( -25.30)
>DroSim_CAF1 108761 96 + 1
UAUACACACGCACCGCAAGCUCACCAAGCGCACA----------CACAUAUG----UGCGUUGGAGUGGACCACAUAGGAACUUAAAGUUUUUAUGAUUCUAA--UAGCUGC
..............(((.(((..((((.((((((----------......))----))))))))..((((...(((((((((.....)))))))))..)))).--.)))))) ( -27.10)
>DroYak_CAF1 124677 106 + 1
UAUACACACGCACCGCAAACUCACCAAAAGUACACACACUCACACACAUAUG----UGCAAAGGAGUGGACCACAUUGGAACUUAAAGUUUUAAUGAUUUCAU--AAGCCAC
..............((....................(((((...(((....)----)).....))))).....(((((((((.....))))))))).......--..))... ( -18.40)
>DroAna_CAF1 115889 90 + 1
UGUGCACACGCACCGCAAACUCACACAAC-UACA----------CACCCAAG----AGUAAUGGAGUGGACCUUACUUAAAUAUA-------UAAGAUCGCACAUACACUAA
(((((...(((.(((...((((.......-....----------.......)----)))..))).)))((.((((..........-------)))).)))))))........ ( -15.57)
>consensus
UAUACACACGCACCGCAAGCUCACCAAACGCACA__________CACAUAUG____UGCGUUGGAGUGGACCACAUAGGAACUUAAAGUUUUUAUGAUUCUAA__AAGCUGC
............((....((((....((((((........................)))))).))))))....(((((((((.....)))))))))................ ( -7.08 =  -9.60 +   2.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:05 2006