| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,147,748 – 15,147,850 |
| Length | 102 |
| Max. P | 0.618631 |
| Location | 15,147,748 – 15,147,850 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 82.43 |
| Mean single sequence MFE | -20.77 |
| Consensus MFE | -15.88 |
| Energy contribution | -16.85 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15147748 102 - 22407834 GUUCCA----ACAUCCACCC-AAUCAAUUGAAAUCCACAACGUCAUUUAACCACAUUAAGCAUACGCCCUGUGUGACUAUCGUUGUGCCCCACCAUGGCCUUAUGAG ......----.(((....((-(.((....))....(((((((.....((..(((((...((....))...)))))..)).)))))))........)))....))).. ( -16.40) >DroSec_CAF1 92706 105 - 1 CUUCCACUACACUUCCACCC-AAUCAAUUGAAAUCCACAACGUCAUUUAGCCACAUUAAGCAUACGCCCUGUGUGGCUAUCGGUGUGCCCUACCAUGGCC-UAUGAG ....................-....................(((((.(((((((((...((....))...)))))))))..((((.....))))))))).-...... ( -22.30) >DroSim_CAF1 92460 100 - 1 CUUCCACUA-----CCACCC-AAUCAAUUGAAAUCCACAACGUCAUUUAGCCACAUUAAGCAUACGCCCUGUGUGGCUAUCGGUGUGCCCUACCAUGGCC-UAUGAG .........-----......-....................(((((.(((((((((...((....))...)))))))))..((((.....))))))))).-...... ( -22.30) >DroEre_CAF1 94134 92 - 1 ------------UUCCACCC-AAUCAAUUGAAAUCCGCAACGUCAUUUAGCCACAUUAAGCAUACGCCCUGUGUGGCUAUCGGUGUACCCUACCAUGGCC-UAUGA- ------------........-....................(((((.(((((((((...((....))...)))))))))..((((.....))))))))).-.....- ( -22.30) >DroYak_CAF1 108482 93 - 1 ------------UUCCACCC-AAUCAAUUGAAAUCCACAACGUCAUUUAGCCACAUUAAGCAUACGCCCUGUGUGGCUAUCGGUGUACGCCACCAUGGCC-UAUGAU ------------........-....................(((((.(((((((((...((....))...)))))))))..((((.....))))))))).-...... ( -24.10) >DroAna_CAF1 99169 94 - 1 C-----CUACCCUCUGACCCAAACCAAUUGAAAUCCACAGCGUCAUUUGGCCACAUUAAGCAUACGCCCUGGGUGCCUAU--GUG-----UAGCAAGGCC-UACGAU .-----..........(((((..((((.(((...........))).)))).........((....))..)))))((((.(--(..-----...)))))).-...... ( -17.20) >consensus C___________UUCCACCC_AAUCAAUUGAAAUCCACAACGUCAUUUAGCCACAUUAAGCAUACGCCCUGUGUGGCUAUCGGUGUGCCCUACCAUGGCC_UAUGAG .........................................(((((.(((((((((...((....))...)))))))))..((((.....)))))))))........ (-15.88 = -16.85 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:03 2006