Locus 5347

Sequence ID 2L_DroMel_CAF1
Location 15,141,856 – 15,141,958
Length 102
Max. P 0.944877
window8493

overview

Window 3

Location 15,141,856 – 15,141,958
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 98.43
Mean single sequence MFE -31.44
Consensus MFE -30.35
Energy contribution -30.75
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.97
SVM decision value 1.35
SVM RNA-class probability 0.944877
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15141856 102 - 22407834
GGCCAGGACUUUUCCUGCGAUUUGCCACCGCCGUUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA
(((((.........((((((((((.....(((.....)))((((((............))))))..........))))))))))........)))))..... ( -32.43)
>DroSec_CAF1 87063 102 - 1
GGCCAGGACUUUUCCUGCGAUUUGCCACCGCCGUUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA
(((((.........((((((((((.....(((.....)))((((((............))))))..........))))))))))........)))))..... ( -32.43)
>DroSim_CAF1 86321 102 - 1
GGCCAGGACUUUUCCUGCGAUUUGCCACCGCCGUUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA
(((((.........((((((((((.....(((.....)))((((((............))))))..........))))))))))........)))))..... ( -32.43)
>DroEre_CAF1 88513 102 - 1
GGCCAGGACUUUUCCUGCGAUUUGCCACCACCGUUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA
(((((.........((((((((((.........((((((.((((((............)))))).))))))...))))))))))........)))))..... ( -30.43)
>DroYak_CAF1 102526 102 - 1
GGCCAGGACAUUUCCUGCGAUUCGCCACCGCCGCUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA
(((((.((((....((((((((.......(((.....)))((((((............))))))............))))))))))))....)))))..... ( -29.50)
>consensus
GGCCAGGACUUUUCCUGCGAUUUGCCACCGCCGUUGAGGCUGCUGCUGUUGGGAUUUUGCGGCAAUUUCAAAUACAAAUUGCAGUGUUUUUAUGGCUACAAA
(((((.........((((((((((.....(((.....)))((((((............))))))..........))))))))))........)))))..... (-30.35 = -30.75 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:57 2006