Locus 5343

Sequence ID 2L_DroMel_CAF1
Location 15,131,227 – 15,131,325
Length 98
Max. P 0.528794
window8488

overview

Window 8

Location 15,131,227 – 15,131,325
Length 98
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 82.21
Mean single sequence MFE -26.20
Consensus MFE -17.64
Energy contribution -18.45
Covariance contribution 0.81
Combinations/Pair 1.20
Mean z-score -1.51
Structure conservation index 0.67
SVM decision value -0.01
SVM RNA-class probability 0.528794
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15131227 98 - 22407834
-----GAAGCCUGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGGCAAACAAAAGUUACGCAUGAAAGAACUGA
-----.....(((....)))((((......(((((.(((((..((...(((.....)))...)))))))..)))))(((....)))..))))........... ( -27.40)
>DroGri_CAF1 90589 88 - 1
ACACACACACCCAGUAAGA----CGUACACUGGGCUGCCAC-----------ACAUGCUUAAGCGUAGCUUGUACAAACAAAACUUACGCAUGGAAAACGCUG
.......((((((((....----.....)))))).))....-----------.(((((.((((......((((....))))..)))).))))).......... ( -17.10)
>DroSec_CAF1 76494 98 - 1
-----GAAGCCCGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGGCAAACGAAAGUUACGCAUGAAAGAACUGA
-----.....(((....)))((((......(((((.(((((..((...(((.....)))...)))))))..)))))(((....)))..))))........... ( -33.30)
>DroSim_CAF1 75687 98 - 1
-----GAAGCCCGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGGCAAACAAAACUUACGCAUGAAAGAACUGA
-----..((((((....)))..))).....(((((.(((((..((...(((.....)))...)))))))..)))))........................... ( -27.80)
>DroEre_CAF1 75632 98 - 1
-----GAAGCCCGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGUCAAACAAAAGUUACGCAUGAAAGAUCUGA
-----.(((((((....)))...........(((.(((.....)))..))).....))))..(((((((((..........)))))))))............. ( -26.70)
>DroYak_CAF1 91896 97 - 1
-----GAAGC-CGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGGAAAACAAAAGUUACGCAUGGAAGAUCUGA
-----....(-((....)))((((....(((.(((.(((((..((...(((.....)))...)))))))..)))........)))...))))........... ( -24.90)
>consensus
_____GAAGCCCGGCAACGGAUGCUAAUACUGCCUUGCCACACGCACUGGCCAAAUGCUUAAGCGUGGCUUAGGCAAACAAAAGUUACGCAUGAAAGAACUGA
.......((((((....)))..))).....(((((.(((((..((....)).....((....)))))))..)))))........................... (-17.64 = -18.45 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:52 2006