| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,126,977 – 15,127,076 |
| Length | 99 |
| Max. P | 0.873433 |
| Location | 15,126,977 – 15,127,076 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.58 |
| Mean single sequence MFE | -22.68 |
| Consensus MFE | -12.51 |
| Energy contribution | -13.37 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15126977 99 - 22407834 CACCAUUUUCAGUGGCACGCACAUUUGCGGUUCAUAAUUUGCGUGCCAUUUUUGUACACGUUGAUGGACAAAAUCAACAAACGAACAGAGUAAAA---AAAA------------- .((..(.((((((((((((((.(((..........))).))))))))))).........((((((.......))))))....))).)..))....---....------------- ( -24.70) >DroPse_CAF1 89138 94 - 1 CACC-----CAGU-GCACGCACAUUUGCGGUUCAUAAUUCGCGUGCCAUUUUUGUA--CGUUGAUGGACAAAAUCAACAAACGAACAAACGAACAGGCGAAA------------- ....-----..((-(....))).(((((.((((....((((.((((.......)))--)((((((.......))))))...)))).....))))..))))).------------- ( -22.50) >DroGri_CAF1 87646 106 - 1 GCCCAUUCUC---GCCAGGCACAUUUGCGGUUCAUAAUUUGCAUGCCAUUUUUGUU--UGUUGAUGGACAAAAUCAACACA-GACCACACCAACA---AAAGCAUCAUACAGAUA ..........---((..((((....(((((........)))))))))..(((((((--(((((((.......)))))))..-.........))))---)))))............ ( -19.50) >DroWil_CAF1 133986 85 - 1 ------------UUGCACGCACAUUUGCGGUUCAUAAUUUGUGUGCCAUUUUUGUA--UGUUGAUGGACAAAAUCAACAAACGAGCGAACAAAAA---AAAA------------- ------------((((..(((....)))(((.(((.....))).)))....((((.--(((((((.......))))))).)))))))).......---....------------- ( -20.50) >DroAna_CAF1 77165 95 - 1 GCCC--UUUUGCUGGCACGCACAUUUGCGGUUCAUAAUUUGCUGGCCAUUUUUGUA--UGUUGAUGGACAAAAUCAACAAACGAACAAGGCAAAA---AAAU------------- (((.--....((..(((((((....))))..........)))..))....(((((.--(((((((.......))))))).)))))...)))....---....------------- ( -26.40) >DroPer_CAF1 90287 94 - 1 CACC-----CAGU-GCACGCACAUUUGCGGUUCAUAAUUCGCGUGCCAUUUUUGUA--CGUUGAUGGACAAAAUCAACAAACGAACAAACGAACAGGCGAAA------------- ....-----..((-(....))).(((((.((((....((((.((((.......)))--)((((((.......))))))...)))).....))))..))))).------------- ( -22.50) >consensus CACC_____CAGUGGCACGCACAUUUGCGGUUCAUAAUUUGCGUGCCAUUUUUGUA__CGUUGAUGGACAAAAUCAACAAACGAACAAACCAAAA___AAAA_____________ ..............(((((((.(((..........))).))))))).............((((((.......))))))..................................... (-12.51 = -13.37 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:48 2006