Locus 534

Sequence ID 2L_DroMel_CAF1
Location 1,672,593 – 1,672,712
Length 119
Max. P 0.521634
window852

overview

Window 2

Location 1,672,593 – 1,672,712
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 81.90
Mean single sequence MFE -21.62
Consensus MFE -18.72
Energy contribution -18.50
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.01
Structure conservation index 0.87
SVM decision value -0.02
SVM RNA-class probability 0.521634
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1672593 119 - 22407834
AGUCCCUUUUCACUCCUGCAGAUGCUGCUGCAAAUCACCUCGAGUAAAAGUGUCAAAACAAUACGAAAAGCGCACAGGCGCAGUGUCCUGCCGCUCCCCACCAUUCCCCCCCCUCACAA
.((.(((((((((((.(((((......))))).........))))....((((.......)))))))))).).)).(((((((....))).))))........................ ( -21.50)
>DroSim_CAF1 1 96 - 1
---CCCUUUUCACUCCUGCAGAUGCUGCUGCAAAUCACCUCGAGUAAAAGUGUCAAAACAAUACGAAAAGCGCACAGGCGCAGUGUCCUGCACCUGCCC--------------------
---..((((((((((.(((((......))))).........))))....((((.......))))))))))....((((.((((....)))).))))...-------------------- ( -24.50)
>DroYak_CAF1 1 99 - 1
AAUCGCUCUUCACUCCUGCAGAUGCUGCUGCAAAUCACCUCGAGUAAAAGUGUCAAAACAAUACGAAAAACGCACAGGCGCAGUAUCCUGCCCCUCCCC--------------------
.................(((((((((((.((...((.....))......((((..................))))..))))))))).))))........-------------------- ( -18.87)
>consensus
A_UCCCUUUUCACUCCUGCAGAUGCUGCUGCAAAUCACCUCGAGUAAAAGUGUCAAAACAAUACGAAAAGCGCACAGGCGCAGUGUCCUGCCCCUCCCC____________________
.................(((((((((((.((...((.....))......((((..................))))..))))))))).))))............................ (-18.72 = -18.50 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:31 2006