Locus 5331

Sequence ID 2L_DroMel_CAF1
Location 15,087,828 – 15,087,947
Length 119
Max. P 0.940282
window8467

overview

Window 7

Location 15,087,828 – 15,087,947
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 76.46
Mean single sequence MFE -31.18
Consensus MFE -18.04
Energy contribution -17.35
Covariance contribution -0.69
Combinations/Pair 1.19
Mean z-score -2.08
Structure conservation index 0.58
SVM decision value 1.29
SVM RNA-class probability 0.940282
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15087828 119 - 22407834
UCCCUUUUCUAUAUAACCAGAGAACCACUCUGUGCACAGAACUCACCUCCAGGGUAACAAUUAGAAUAAUUGUCUGUGCCGUGGUCAAACCUGGCCAUAGCCUCGACACCUGUCCAGAG
....((((((........))))))...(((((.(((((((....(((.....)))..((((((...))))))))))))).(((((((....)))))))......(((....)))))))) ( -31.80)
>DroPse_CAF1 45989 111 - 1
--------UCUGAAAUGCAUAGGCACACUCCAUUAAUAUUACUCACUUCGAGGGUAACAAUCAGUAUAAUUGUCUGAGCUGUGGUUAAUCCUGGCCAUAGCCUCGACACCUGACCAGAG
--------((((..((((...((......)).......((((((.......))))))......))))...((((.((((((((((((....))))))))).)))))))......)))). ( -28.70)
>DroSec_CAF1 32346 117 - 1
UCCCUU--CCAGAUAACCAGAAAUCCACUCUGUGCACAGAACUCACCUCCAGGGUAACAAUUAGAAUAAUUGUCUGUGCCGUGGUCAAUCCUGGCCAUAGCCUCGACACCUGUCCAGAG
......--...................(((((.(((((((....(((.....)))..((((((...))))))))))))).(((((((....)))))))......(((....)))))))) ( -29.70)
>DroEre_CAF1 33104 97 - 1
UCCCCU----------------------UCCAGGGACAGAACUCACCUCUAGGGUAACAAUUAGAAUAAUUGUCUGGGCCGUGGUCAAUCCAGGCCACAGCCGCGACACCUGUCCAGAA
......----------------------.....((((((.....(((.....)))...............((((..(((.((((((......)))))).)))..)))).)))))).... ( -32.00)
>DroYak_CAF1 40219 117 - 1
UCCCAU--CCAGAUAAUUAGAAGUGCACUCCGUGCACAAAACUCACCUCUAGGGUAACAAUUAGAAUAAUUGUCUGUGCCGUGGUCAAUCCUGGCCAUAGCCUCGACACCUGUCCAGAG
......--.((((((((((...((((((...)))))).......(((.....)))...........)))))))))).((..((((((....))))))..))((.(((....))).)).. ( -34.80)
>DroPer_CAF1 46143 111 - 1
--------UCUGAAAUGCAUAGGCGUACUCCAUUAAUAUUACUCACUUCGAGGGUAACAAUCAGUAUAAUUGUCUGAGCUGUGGUUAGUCCUGGCCAUAGCCUCGACACCUGACCAGAG
--------((((..((((....))))............((((((.......))))))...((((......((((.((((((((((((....))))))))).))))))).)))).)))). ( -30.10)
>consensus
UCCC_U__CCAGAUAACCAGAGGCCCACUCCAUGCACAGAACUCACCUCCAGGGUAACAAUUAGAAUAAUUGUCUGUGCCGUGGUCAAUCCUGGCCAUAGCCUCGACACCUGUCCAGAG
.........................................((((((.....)))........((.....((((...((.(((((((....))))))).))...))))....))..))) (-18.04 = -17.35 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:32 2006