| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,637,387 – 1,637,484 |
| Length | 97 |
| Max. P | 0.997958 |
| Location | 1,637,387 – 1,637,484 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 68.14 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -14.45 |
| Energy contribution | -14.57 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.50 |
| SVM decision value | 2.97 |
| SVM RNA-class probability | 0.997958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1637387 97 - 22407834 AACGGUUUUUCAA----U-GGCCCUGCAUC---GCCAGAGGUCA---------CAAAUCGAAUCCAAAAGCCAU---CGAGAGGCCA---AUCGAGUGGCAACCUUGAAAACAGCCGACA ..(((((((((((----(-(((((((....---..))).)))))---------................(((((---(((.......---.)))).))))....)))))))..))))... ( -29.10) >DroWil_CAF1 204869 108 - 1 AACGGUUAUUCAUGGUUUUGACCAUGCACC---G-CAGAGGUCAAGUCGAAGACCAAUCGAAGACAAAA--------CCAGAAACUAAAAAUCGAUUGUUAACCUUGAAAACAGCCGACA ..(((((.((((.((((((((((.(((...---)-))..)))))).........(((((((........--------..............)))))))..)))).))))...)))))... ( -26.75) >DroAna_CAF1 149875 102 - 1 AACGGUUUUUCAA----UUGGCCCUGCACCGGAGCCAGAGGUCA---------CAAAAC---CCCAAAAUCGAAGCCGAAGAGGCCA--AAUCGAAGGGUAACCUUGAAAACAGCCGAUA ..(((((((((..----.((((((......)).))))(((((..---------....((---((.....((((.(((.....)))..--..)))).)))).))))))))))..))))... ( -30.20) >consensus AACGGUUUUUCAA____UUGGCCCUGCACC___GCCAGAGGUCA_________CAAAUCGAACCCAAAA_C_A____CAAGAGGCCA__AAUCGAAUGGUAACCUUGAAAACAGCCGACA ..((((((((((.......((((((((......).))).))))........................................(((...........))).....)))))..)))))... (-14.45 = -14.57 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:30 2006