Locus 5329

Sequence ID 2L_DroMel_CAF1
Location 15,082,948 – 15,083,043
Length 95
Max. P 0.538262
window8465

overview

Window 5

Location 15,082,948 – 15,083,043
Length 95
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 77.11
Mean single sequence MFE -28.77
Consensus MFE -18.69
Energy contribution -19.33
Covariance contribution 0.64
Combinations/Pair 1.10
Mean z-score -1.19
Structure conservation index 0.65
SVM decision value 0.01
SVM RNA-class probability 0.538262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15082948 95 - 22407834
UUUUAUUGAGCCAAAGGCGACGAGGAGUCAUCAAAUGACCUGCGUAGGGCACUUUGCGGCGUAGUUGGCGGGAAGCUGGAAA--AAAGUA-AGGCA-------------AA
.....(((.(((....(((....((.(((((...))))))).)))..))).((((((.......(..((.....))..)...--...)))-)))))-------------). ( -23.42)
>DroVir_CAF1 39466 93 - 1
UUUUGUUGAGCCAAAGGCGACGCGGGGUCAUUAAAUGGCCGGCAUAGGGCACUUUGCGGCGUAGUUGGCGGGAAGCUGCAA---A-A---------GAAAUU-----UAAA
((((((...(((((..(((.(((((((((((...)))))).((.....))...))))).)))..)))))((....))))))---)-)---------......-----.... ( -28.80)
>DroPse_CAF1 39407 96 - 1
UUUUAUUCAGCCAGAGCCGGCGCGGCGUCAUCAAAUGACCAGCGUACGGCACUUUGCGGCGUAUAUGGCGGGAAGCUGCAAGAAAGCGUA-AAA-A-------------AA
((((((.(.(((((.((((((((.(.(((((...)))))).)))).)))).))....))).......((((....))))......).)))-)))-.-------------.. ( -29.80)
>DroMoj_CAF1 35097 106 - 1
UUUUGUUGAGCCAGAGGCGACGCGGCGUCAUCAAAUGGCCAGCGUAUGGCACUUUACGGCGUAAUUGGCGGGAAGCUGCAA---U-AUUA-AAACAGAGAUUAGAUGAAAA
(((((((..(((((((((.(((((((...........))).))))...)).))))..))).((((..((((....))))..---.-))))-.)))))))............ ( -28.90)
>DroAna_CAF1 29388 95 - 1
UUUUAUUGAGCCAGAGGCGUCGCGGCGUCAUCAGAUGGCCGGCGUAGGGCACUUUGCGGCGUAGUUGGCGGGAAGCUGGAA---AAUUCAAAAGGA-------------AA
((((.(((((((((..(((((((((((((....))))(((.......)))...)))))))))..)))))((....))....---...)))).))))-------------.. ( -31.90)
>DroPer_CAF1 39616 96 - 1
UUUUAUUCAGCCAGAGCCGGCGCGGCGUCAUCAAAUGACCAGCGUACGGCACUUUGCGGCGUAUAUGGCGGGAAGCUGCAAGAAAGCGUA-AAA-A-------------AA
((((((.(.(((((.((((((((.(.(((((...)))))).)))).)))).))....))).......((((....))))......).)))-)))-.-------------.. ( -29.80)
>consensus
UUUUAUUGAGCCAGAGGCGACGCGGCGUCAUCAAAUGACCAGCGUAGGGCACUUUGCGGCGUAGUUGGCGGGAAGCUGCAA___A_AGUA_AAA_A_____________AA
.........(((((..(((.(((((.(((((...)))))..((.....))...))))).)))..))))).......................................... (-18.69 = -19.33 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:30 2006