Locus 5328

Sequence ID 2L_DroMel_CAF1
Location 15,078,663 – 15,078,755
Length 92
Max. P 0.722380
window8464

overview

Window 4

Location 15,078,663 – 15,078,755
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 89.49
Mean single sequence MFE -20.13
Consensus MFE -15.03
Energy contribution -14.92
Covariance contribution -0.11
Combinations/Pair 1.12
Mean z-score -2.59
Structure conservation index 0.75
SVM decision value 0.40
SVM RNA-class probability 0.722380
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15078663 92 + 22407834
UUUAGCCAUUUCUGUUCAAGUCUGGCAUAUUUAUGCAAAAGACUUGUAACUUAAAUGGUAGAUUAAGUUUAUCUAAAUAUAUAUUUCAUUGA
....(((((((..((((((((((.((((....))))...))))))).)))..)))))))((((.......)))).................. ( -25.10)
>DroSec_CAF1 23320 92 + 1
UUUAGCUAUUUGCGUUCAAGUCUGACAUAUUUAAGCAGAAGACUUGUAACUUAAAUGCUAGAUUAGGCUUAUCUAAAUAUAUAUGUUAUUGA
((((((.(((((.((((((((((................))))))).))).)))))))))))(((((....)))))................ ( -18.69)
>DroSim_CAF1 20432 91 + 1
U-UAACUAUUUCUGUUCAAGUCUGACAUAUUUAAGCAGAAGACUUGUAACUUAAAUGGUACAUUAGGCUUAUCUAAAUAUAUAUAUUAUUGA
.-..(((((((..((((((((((................))))))).)))..)))))))...(((((....)))))................ ( -16.59)
>consensus
UUUAGCUAUUUCUGUUCAAGUCUGACAUAUUUAAGCAGAAGACUUGUAACUUAAAUGGUAGAUUAGGCUUAUCUAAAUAUAUAUAUUAUUGA
....(((((((..((((((((((................))))))).)))..)))))))................................. (-15.03 = -14.92 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:29 2006