Locus 5324

Sequence ID 2L_DroMel_CAF1
Location 15,060,829 – 15,060,920
Length 91
Max. P 0.657289
window8456

overview

Window 6

Location 15,060,829 – 15,060,920
Length 91
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 76.35
Mean single sequence MFE -15.24
Consensus MFE -10.62
Energy contribution -11.18
Covariance contribution 0.56
Combinations/Pair 1.15
Mean z-score -1.09
Structure conservation index 0.70
SVM decision value 0.26
SVM RNA-class probability 0.657289
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15060829 91 - 22407834
GCCUA--UCAUCUA------GAAAUUAAUCUACAAUCAAUAUU-UCC-CGCAGGUGAGGACACCACACAAUGGAAGAAAAUGGUCGUCCUAACUAGCAACA
.....--.....((------((......))))...........-...-.((.(((.(((((((((...............)))).))))).))).)).... ( -16.76)
>DroVir_CAF1 4837 92 - 1
---UGAAAUAGAUUGAAAACGAAAUGAAUUGAU---AA--ACGCUUU-UUCAGGUGAGGACACCUCGCAAUGGAAGAAAAUGAUAGUGCUGAACAAUAACA
---........................((((..---..--.((((((-(((..((((((...))))))....))))).......)))).....)))).... ( -12.91)
>DroSec_CAF1 5286 91 - 1
GCCUA--UUAGCUA------GAAAAUAAUCUACAAUCAAUAUU-UCC-CGCAGGUGAGGACACCACACAAUGGAAGAAAAUGGUCGUCCUAACUAGCAACA
((...--...))((------((......))))...........-...-.((.(((.(((((((((...............)))).))))).))).)).... ( -16.96)
>DroSim_CAF1 5998 91 - 1
GACUA--UUAGCUA------GAAAAUAAUCUACAAUCAAUAUU-UUC-CGCAGGUGAGGACACCACACAAUGGAAGAAAAUGGUCGUCCUAACUAGCAACA
(((((--((.(.((------((......)))))........((-(((-((...(((.((...)).)))..))))))).)))))))................ ( -18.40)
>DroEre_CAF1 5523 79 - 1
---------------------AAAACAAUCUACAAUCAAUUUU-UUCCCGCAGGUGAGGACACCACACAAUGGAAGAAAAUGGUCGUCUUAACCAGCAACA
---------------------......................-.....((.(((.(((((((((...............)))).))))).))).)).... ( -14.46)
>DroYak_CAF1 5170 91 - 1
ACCUA--UUAGCUA------CAAAACAAUCUACAAUCAAUUUU-AUC-CGCAGGCGAGGACACCACACAAUGGAAGAAAAUGGUCGUCUUAACUAGCAACA
.....--.......------.......................-...-.((.((..(((((((((...............)))).)))))..)).)).... ( -11.96)
>consensus
GCCUA__UUAGCUA______GAAAAUAAUCUACAAUCAAUAUU_UUC_CGCAGGUGAGGACACCACACAAUGGAAGAAAAUGGUCGUCCUAACUAGCAACA
.................................................((.(((.((((((((.................))).))))).))).)).... (-10.62 = -11.18 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:22 2006