| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,622,538 – 1,622,631 |
| Length | 93 |
| Max. P | 0.991737 |
| Location | 1,622,538 – 1,622,631 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.76 |
| Mean single sequence MFE | -20.57 |
| Consensus MFE | -15.10 |
| Energy contribution | -15.22 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.73 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991737 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1622538 93 - 22407834 -GC---C---CGUGGAGAUUGCAAUUUGGAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAAGCAGCC---AA----AGGAGCAAGGAAACAAUGCGGA -.(---(---..(((.((((((((((((........)))))))))))).........(((.....)))......))---).----.)).(((.(....)..)))... ( -23.70) >DroVir_CAF1 149487 81 - 1 -GC---CCAACGUUGAGAUUGCAAUUUAAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAACGACACCCAAC----AA----CAAAUU----------UG---- -..---.....((((.((((((((((((........)))))))))))).........(((.....)))......)----))----).....----------..---- ( -17.60) >DroEre_CAF1 103270 93 - 1 -GC---C---CGUUGAGAUUGCAAUUUGGAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAACGACAAGCAGCC---AA----AAGAGCAAGGAAACCAUGCGAA -((---.---((((((((((((((((((........))))))))))))...))))))(((.....)))..))....---..----....(((.(....)..)))... ( -22.40) >DroYak_CAF1 101939 98 - 1 GGC---C---CGUUGAGAUUGCAAUUUGGAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAAGCCAAC---AAAAAAAAAAGCUAGCAAACAUUGCGGA (((---.---((((((((((((((((((........))))))))))))...))))))(((.....)))..)))...---..............(((.....)))... ( -23.50) >DroMoj_CAF1 156335 84 - 1 -GCGUCCAAACGUUGAGAUUGCAAUUUAAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAUCCAGC----AA----CAAAUU----------UG---- -((.......((((((((((((((((((........))))))))))))...))))))(((.....))).....))----..----......----------..---- ( -18.90) >DroAna_CAF1 133081 90 - 1 -GC---C---CGUUGAGAUUGCAAUUUGAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCGCACCAACAAGACACCCACAAAGAAAAAAGU----------UACGAG -((---(---((((((((((((((((((........))))))))))))...)))))))..)).............................----------...... ( -17.30) >consensus _GC___C___CGUUGAGAUUGCAAUUUGAAAAUCGAUAAAUUGCAAUUAAUUUAAUGGUCACAGCGACAAGCAACC___AA____AAAAGC__________UGCG_A ..........((((((((((((((((((........))))))))))))...))))))(((.....)))....................................... (-15.10 = -15.22 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:29 2006