| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,021,373 – 15,021,477 |
| Length | 104 |
| Max. P | 0.510087 |
| Location | 15,021,373 – 15,021,477 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 75.89 |
| Mean single sequence MFE | -30.08 |
| Consensus MFE | -18.23 |
| Energy contribution | -18.15 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15021373 104 + 22407834 AAAAGCUGAUGCUGUUGGCAGGAUGCAGCACGGUCUGCACCACUGUAGCCGAGGCUGCCAAAAUGUGGAAUCUAAUUGUGGUAAGUGAAAUUUGCAUAGCGCCA------ ....((((((.(((....))).)).)))).(((.(((((....)))))))).(((..(((.....))).........((.((((((...))))))...))))).------ ( -30.30) >DroVir_CAF1 13971 103 + 1 AAAAGCUGAUGCUGUUGGCGGGCUGCAGCACAGUCUGCACCACUGUGGCAGAGGCAGCCAAAAUGUGGAAUCUAAUUGUGGUAAGCAAA--UUGUAAAU-----CAUCUA ....(((..(((.((((((((((((.....)))))))).((((..((((.......))))....))))....)))).)))...)))...--........-----...... ( -30.10) >DroGri_CAF1 14224 108 + 1 AAAAGUUGAUGCUACUUGCGGGUUGCAGCACUGUGUGCACCACUGUGGCAGAGGCAGCCAAAAUGUGGAACUUAAUUGUGGUAAGCAAA--GUGGAAAACAUAAAAUAUA ....(((....((((((((..(..(((((((...)))).((((..((((.......))))....))))........)))..)..)).))--))))..))).......... ( -30.80) >DroWil_CAF1 27556 88 + 1 AAAAGCUCAUGUUACUGGCAGGAUGCAGCACAGUUUGUACAACUGUGGCCGAGGCUGCCAAAAUGUGGAAUCUAAUUGUGGUAAGUAC---------------------- ......(((((((..((((((....(.((((((((.....)))))).)).)...)))))).)))))))....................---------------------- ( -20.40) >DroMoj_CAF1 18138 105 + 1 AAAAGCUGAUGCUCUUGGCGGGCUGCAGCACUGUCUGCACCACCGUUGCGGAGGCGGCCAAAAUGUGGAAUCUAAUUGUGGUAAGCCAA--UUGAAUAU---AGCAUAUA ....((((...(..(((((..((..(((.....((..((.....(((((....))))).....))..))......)))..))..)))))--..)....)---)))..... ( -30.60) >DroAna_CAF1 14406 104 + 1 AAAAGCUCAUGUUGCUGGCGGGAUGCAGCACGGUCUGCACCACGGUGGCGGAGGCUGCCAAAAUGUGGAAUCUCAUUGUGGUAAGUGGCACUUGCAUAAUGCCA------ ...(((.......)))((((((((((((......)))).(((((.((((((...))))))...))))).)))))((((((.((((.....))))))))))))).------ ( -38.30) >consensus AAAAGCUGAUGCUGCUGGCGGGAUGCAGCACAGUCUGCACCACUGUGGCAGAGGCUGCCAAAAUGUGGAAUCUAAUUGUGGUAAGCAAA__UUGCAUAA____A______ ....(((..((((((.(...((.(((((......))))))).).))))))..))).((((.(((..........))).))))............................ (-18.23 = -18.15 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:06 2006